Variant report

Variant	rs4737508
Chromosome Location	chr8:59586468-59586469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11995052	1.00[ASN][1000 genomes]
rs13270855	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62512925	1.00[ASN][1000 genomes]
rs7011981	1.00[ASN][1000 genomes]
rs7013052	1.00[ASN][1000 genomes]
rs901955	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3436252	chr8:59581925-59615994	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4737508	TOX	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59584200-59587800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:59584400-59586800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:59584400-59588200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:59585200-59587400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:59585600-59586600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:59585600-59586800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:59585800-59590200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:59586000-59586600	Weak transcription	K562	blood
9	chr8:59586000-59588000	Enhancers	Fetal Muscle Leg	muscle
10	chr8:59586400-59586600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr8:59586400-59586800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:59586400-59586800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr8:59586400-59586800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:59586400-59587000	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links