Variant report

Variant	rs901955
Chromosome Location	chr8:59578987-59578988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11995052	1.00[ASN][1000 genomes]
rs13270855	1.00[ASN][1000 genomes]
rs4737508	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62512925	1.00[ASN][1000 genomes]
rs7011981	1.00[ASN][1000 genomes]
rs7013052	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59572600-59584000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:59573800-59582000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr8:59573800-59582200	Weak transcription	GM12878-XiMat	blood
4	chr8:59574000-59584000	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:59575400-59579600	Weak transcription	K562	blood
6	chr8:59575400-59580000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:59576600-59581600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:59578600-59579200	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links