Variant report

Variant	rs4738567
Chromosome Location	chr8:57997033-57997034
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10504216	0.89[EUR][1000 genomes]
rs10504217	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10958522	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10958523	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11774645	0.82[CEU][hapmap]
rs11774697	0.81[CEU][hapmap]
rs11775568	0.81[CEU][hapmap]
rs11776524	0.83[ASN][1000 genomes]
rs11777459	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11786074	0.82[CEU][hapmap]
rs11786328	0.94[CEU][hapmap]
rs12155661	0.82[ASN][1000 genomes]
rs12216730	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12375445	1.00[CEU][hapmap]
rs12675340	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1442125	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1596142	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16921589	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16921623	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16921626	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16921675	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16921676	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16921808	0.89[CEU][hapmap]
rs17192845	0.94[CEU][hapmap]
rs17194487	0.85[CEU][hapmap]
rs17794451	0.86[EUR][1000 genomes]
rs17801003	0.89[CEU][hapmap]
rs17802082	0.85[CEU][hapmap]
rs17804335	0.81[CEU][hapmap]
rs17804365	0.82[CEU][hapmap]
rs2218271	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2317990	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3968283	0.81[ASN][1000 genomes]
rs4590436	0.88[ASN][1000 genomes]
rs4738578	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs55923836	0.88[ASN][1000 genomes]
rs58244172	0.88[ASN][1000 genomes]
rs58647001	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59424848	0.88[ASN][1000 genomes]
rs7000752	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7015093	0.82[ASN][1000 genomes]
rs72649114	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72649117	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7814707	0.83[ASN][1000 genomes]
rs7821160	0.88[ASN][1000 genomes]
rs7840100	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9771646	0.85[ASN][1000 genomes]
rs9772760	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3430321	chr8:57858417-58055129	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027125	chr8:57891279-58095884	Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57996200-58002600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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