Variant report

Variant	rs7015093
Chromosome Location	chr8:58018853-58018854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10086791	0.83[CEU][hapmap]
rs10092884	0.82[CEU][hapmap]
rs10092993	0.87[CEU][hapmap]
rs10093755	0.91[CEU][hapmap]
rs10504217	0.87[ASN][1000 genomes]
rs10808915	0.83[CEU][hapmap]
rs10958522	0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10958523	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs11776527	0.83[CEU][hapmap]
rs11777459	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11782197	0.91[ASN][1000 genomes]
rs11782217	0.91[ASN][1000 genomes]
rs12155661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216730	0.84[ASN][1000 genomes]
rs12675340	0.88[ASN][1000 genomes]
rs1442125	0.88[ASN][1000 genomes]
rs1596142	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16921589	0.91[ASN][1000 genomes]
rs16921623	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16921626	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16921675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16921676	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16921751	0.81[CEU][hapmap]
rs16921754	0.83[CEU][hapmap]
rs16921777	0.83[CEU][hapmap]
rs1874375	0.83[CEU][hapmap]
rs2218271	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2317990	0.91[ASN][1000 genomes]
rs3968283	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738567	0.82[ASN][1000 genomes]
rs4738578	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs58647001	0.91[ASN][1000 genomes]
rs6989809	0.90[CEU][hapmap]
rs7000752	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs72649114	0.87[ASN][1000 genomes]
rs72649117	0.87[ASN][1000 genomes]
rs7819097	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7837765	0.83[CEU][hapmap]
rs7840100	0.88[ASN][1000 genomes]
rs903716	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3430321	chr8:57858417-58055129	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027125	chr8:57891279-58095884	Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv890933	chr8:58005923-58084006	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3438616	chr8:58018642-58018963	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7015093	HDGFRP3	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58017400-58021000	Weak transcription	HepG2	liver
2	chr8:58017800-58020800	Weak transcription	Liver	Liver
3	chr8:58018800-58020000	Enhancers	Fetal Kidney	kidney

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