Variant report

Variant	rs7819097
Chromosome Location	chr8:58036942-58036943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10086791	0.87[CEU][hapmap]
rs10092884	0.88[CEU][hapmap]
rs10092993	0.92[CEU][hapmap]
rs10093755	0.96[CEU][hapmap]
rs10504217	0.91[ASN][1000 genomes]
rs10808915	0.87[CEU][hapmap]
rs10958522	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10958523	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10958524	0.93[EUR][1000 genomes]
rs11774303	0.83[CEU][hapmap]
rs11776527	0.87[CEU][hapmap]
rs11777459	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11782197	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11782217	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11990600	0.85[CEU][hapmap]
rs11992943	0.83[CEU][hapmap]
rs12155661	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12216730	0.81[ASN][1000 genomes]
rs12675340	0.92[ASN][1000 genomes]
rs12682137	0.83[CEU][hapmap]
rs1442125	0.92[ASN][1000 genomes]
rs1596142	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16921589	0.89[ASN][1000 genomes]
rs16921623	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16921626	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16921675	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16921676	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16921677	0.83[ASN][1000 genomes]
rs16921751	0.86[CEU][hapmap]
rs16921754	0.87[CEU][hapmap]
rs16921777	0.87[CEU][hapmap]
rs1874375	0.88[CEU][hapmap]
rs2218271	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2317990	0.89[ASN][1000 genomes]
rs34120669	0.93[EUR][1000 genomes]
rs3968283	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58647001	0.89[ASN][1000 genomes]
rs6989809	0.95[CEU][hapmap]
rs7000752	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7015093	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72649114	0.91[ASN][1000 genomes]
rs72649117	0.91[ASN][1000 genomes]
rs7821125	0.85[CEU][hapmap]
rs7837765	0.88[CEU][hapmap]
rs7840100	0.92[ASN][1000 genomes]
rs903716	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3430321	chr8:57858417-58055129	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027125	chr8:57891279-58095884	Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv890933	chr8:58005923-58084006	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58036600-58037200	Enhancers	Fetal Muscle Leg	muscle
2	chr8:58036600-58037200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:58036600-58037400	Enhancers	Psoas Muscle	Psoas
4	chr8:58036600-58037800	Enhancers	Skeletal Muscle Female	skeletal muscle

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