Variant report

Variant	rs4739066
Chromosome Location	chr8:64104092-64104093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64098470..64101742-chr8:64102589..64105201,8	K562	blood:
2	chr8:63950976..63952728-chr8:64102319..64104785,2	K562	blood:

Variant related genes	Relation type
ENSG00000185728	Chromatin interaction
ENSG00000137563	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10957275	0.82[EUR][1000 genomes]
rs12542182	0.82[EUR][1000 genomes]
rs12542741	0.80[EUR][1000 genomes]
rs12547669	0.80[EUR][1000 genomes]
rs12549833	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12550222	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12550793	0.82[EUR][1000 genomes]
rs12677153	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12678231	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2241753	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34803356	0.80[EUR][1000 genomes]
rs3857972	0.82[EUR][1000 genomes]
rs3929126	0.82[EUR][1000 genomes]
rs4601308	0.84[EUR][1000 genomes]
rs4737633	0.87[EUR][1000 genomes]
rs4739053	0.82[EUR][1000 genomes]
rs4739068	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61223024	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6983011	0.82[EUR][1000 genomes]
rs7000495	0.82[EUR][1000 genomes]
rs7000788	0.82[EUR][1000 genomes]
rs7000927	0.82[EUR][1000 genomes]
rs7001014	0.82[EUR][1000 genomes]
rs7011111	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73254967	0.82[EUR][1000 genomes]
rs73254968	0.82[EUR][1000 genomes]
rs73684686	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73684689	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73686707	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73686709	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643383	0.84[EUR][1000 genomes]
rs9643384	0.82[EUR][1000 genomes]
rs9643556	0.82[EUR][1000 genomes]
rs9643557	0.82[EUR][1000 genomes]
rs9643558	0.82[EUR][1000 genomes]
rs9643559	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890965	chr8:64006201-64104092	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64090000-64108200	Weak transcription	Fetal Heart	heart
2	chr8:64097000-64108200	Weak transcription	Right Atrium	heart
3	chr8:64099200-64105800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:64100000-64105400	Weak transcription	Aorta	Aorta
5	chr8:64100000-64108200	Weak transcription	Pancreas	Pancrea
6	chr8:64100000-64118800	Weak transcription	Esophagus	oesophagus
7	chr8:64100200-64108200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:64100200-64108200	Weak transcription	Gastric	stomach
9	chr8:64100400-64107200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr8:64100400-64112600	Weak transcription	Stomach Mucosa	stomach
11	chr8:64100600-64104800	Weak transcription	Brain Angular Gyrus	brain
12	chr8:64100600-64107600	Weak transcription	Right Ventricle	heart
13	chr8:64100600-64113200	Weak transcription	Hela-S3	cervix
14	chr8:64100600-64122200	Weak transcription	Fetal Kidney	kidney
15	chr8:64100600-64127000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:64100800-64106600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:64100800-64113000	Weak transcription	HSMMtube	muscle
18	chr8:64101000-64108600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:64101200-64104600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:64101200-64104600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr8:64101200-64104800	Weak transcription	NHLF	lung
22	chr8:64101200-64107600	Weak transcription	Spleen	Spleen
23	chr8:64101200-64108200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:64101200-64117200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:64101400-64105800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
26	chr8:64101400-64108200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr8:64101600-64105400	Weak transcription	Ovary	ovary
28	chr8:64101600-64105600	Weak transcription	Fetal Stomach	stomach
29	chr8:64101600-64105600	ZNF genes & repeats	GM12878-XiMat	blood
30	chr8:64101600-64106600	Weak transcription	Left Ventricle	heart
31	chr8:64101600-64107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr8:64101600-64108200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:64101600-64128000	Weak transcription	Colonic Mucosa	Colon
34	chr8:64101600-64136000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:64101800-64104800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:64101800-64105800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:64102000-64104600	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr8:64102000-64104600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr8:64102000-64105200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr8:64102000-64105200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr8:64102000-64105200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:64102200-64104200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
43	chr8:64102200-64104200	Weak transcription	Osteobl	bone
44	chr8:64102200-64105800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr8:64102200-64106600	Weak transcription	Lung	lung
46	chr8:64102200-64112400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr8:64102400-64104200	ZNF genes & repeats	Fetal Intestine Large	intestine
48	chr8:64102400-64104400	Weak transcription	NH-A	brain
49	chr8:64102400-64104600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:64102400-64106600	Weak transcription	Colon Smooth Muscle	Colon

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