Variant report

Variant	rs73686709
Chromosome Location	chr8:64133599-64133600
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:64132912..64134470-chr8:64135423..64137505,2	MCF-7	breast:
2	chr8:64085254..64087661-chr8:64131958..64134792,2	MCF-7	breast:
3	chr8:64079083..64082581-chr8:64133450..64136744,4	K562	blood:

Variant related genes	Relation type
ENSG00000270673	Chromatin interaction
ENSG00000185728	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12549833	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12550222	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12677153	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12678231	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241753	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4601308	0.80[EUR][1000 genomes]
rs4737633	0.91[EUR][1000 genomes]
rs4739066	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4739068	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61223024	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7011111	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73684686	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73684689	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73686707	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7820666	0.82[EUR][1000 genomes]
rs9643383	0.80[EUR][1000 genomes]
rs9643559	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64101600-64136000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:64108600-64134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:64119600-64138800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:64122600-64138600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:64122800-64135000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:64122800-64135000	Weak transcription	GM12878-XiMat	blood
7	chr8:64122800-64135200	Weak transcription	Fetal Kidney	kidney
8	chr8:64123000-64138200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:64124000-64135000	Weak transcription	Liver	Liver
10	chr8:64124400-64135000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:64124400-64138800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:64124600-64135400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:64126200-64135000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr8:64126200-64138800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr8:64126400-64135000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:64126400-64138400	Weak transcription	Dnd41	blood
17	chr8:64126600-64135000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr8:64126600-64135200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr8:64127400-64134800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:64127600-64135000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:64127800-64135000	Weak transcription	Primary B cells from cord blood	blood
22	chr8:64127800-64138800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr8:64127800-64138800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:64128200-64138400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:64128400-64139000	Weak transcription	Fetal Thymus	thymus
26	chr8:64131200-64134600	Enhancers	HMEC	breast
27	chr8:64131400-64134000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:64131400-64134400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:64131400-64136000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:64131800-64133800	Flanking Active TSS	NHDF-Ad	bronchial
31	chr8:64131800-64135200	Enhancers	Hela-S3	cervix
32	chr8:64132000-64133600	Enhancers	H1 Cell Line	embryonic stem cell
33	chr8:64132000-64133600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr8:64132000-64133600	Enhancers	Fetal Intestine Small	intestine
35	chr8:64132000-64134000	Enhancers	Left Ventricle	heart
36	chr8:64132000-64134600	Enhancers	Fetal Intestine Large	intestine
37	chr8:64132000-64134600	Enhancers	Ovary	ovary
38	chr8:64132000-64134600	Enhancers	Right Atrium	heart
39	chr8:64132200-64133600	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr8:64132200-64133600	Flanking Active TSS	A549	lung
41	chr8:64132200-64133800	Flanking Active TSS	NH-A	brain
42	chr8:64132600-64133600	Enhancers	Brain Angular Gyrus	brain
43	chr8:64132600-64133600	Enhancers	Stomach Mucosa	stomach
44	chr8:64132600-64133800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr8:64132600-64133800	Enhancers	Placenta Amnion	Placenta Amnion
46	chr8:64132600-64134800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr8:64132800-64133600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr8:64132800-64133600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr8:64132800-64133800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr8:64132800-64133800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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