Variant report
| Variant | rs4741328 |
|---|---|
| Chromosome Location | chr9:13764507-13764508 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1011529 | 0.82[ASN][1000 genomes] |
| rs10123821 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10733266 | 0.91[ASN][1000 genomes] |
| rs10733268 | 0.92[ASN][1000 genomes] |
| rs10733269 | 0.98[ASN][1000 genomes] |
| rs10738343 | 0.91[ASN][1000 genomes] |
| rs10738344 | 0.94[ASN][1000 genomes] |
| rs10756494 | 0.92[ASN][1000 genomes] |
| rs10756497 | 0.96[ASN][1000 genomes] |
| rs10756500 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10756505 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10810022 | 0.91[ASN][1000 genomes] |
| rs10810023 | 0.91[ASN][1000 genomes] |
| rs10961247 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10961248 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1109392 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12351336 | 0.91[ASN][1000 genomes] |
| rs1854163 | 0.86[EUR][1000 genomes] |
| rs35054099 | 0.85[AMR][1000 genomes] |
| rs4741330 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4741331 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7018993 | 0.94[ASN][1000 genomes] |
| rs7469826 | 0.81[ASN][1000 genomes] |
| rs7855381 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv892590 | chr9:13689066-13777299 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv892591 | chr9:13763734-13828594 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13758200-13787200 | Weak transcription | Aorta | Aorta |
| 2 | chr9:13760000-13764600 | Weak transcription | Fetal Muscle Leg | muscle |
