Variant report

Variant	rs12351336
Chromosome Location	chr9:13759203-13759204
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13757149..13759408-chr9:13764816..13767802,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1011529	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10123821	0.82[ASN][1000 genomes]
rs10733265	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10733266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10733268	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10733269	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10738340	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10738343	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10738344	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10756494	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756497	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756505	0.83[ASN][1000 genomes]
rs10756509	0.83[EUR][1000 genomes]
rs10810017	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810021	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810022	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10810023	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10961221	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10961222	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10961247	0.82[ASN][1000 genomes]
rs10961248	0.82[ASN][1000 genomes]
rs1327511	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4741328	0.91[ASN][1000 genomes]
rs7018993	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7469826	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7855381	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13758200-13787200	Weak transcription	Aorta	Aorta
2	chr9:13758400-13760000	Enhancers	Fetal Lung	lung
3	chr9:13758600-13759400	Enhancers	Ovary	ovary
4	chr9:13758600-13759600	Enhancers	Fetal Stomach	stomach
5	chr9:13758600-13759800	Enhancers	Fetal Kidney	kidney
6	chr9:13758600-13760000	Enhancers	Fetal Muscle Leg	muscle
7	chr9:13758800-13759800	Enhancers	Psoas Muscle	Psoas
8	chr9:13758800-13760000	Enhancers	HSMM	muscle
9	chr9:13758800-13760200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:13759000-13759400	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:13759000-13759400	Enhancers	Placenta	Placenta
12	chr9:13759000-13760000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:13759000-13760200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:13759000-13760400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:13759200-13760200	Enhancers	HSMMtube	muscle

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