Variant report

Variant	rs10810017
Chromosome Location	chr9:13751741-13751742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1011529	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10733265	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10733266	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10733268	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10733269	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10738340	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10738341	0.90[AFR][1000 genomes]
rs10738343	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10738344	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10756494	0.80[AMR][1000 genomes]
rs10756497	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810013	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10810014	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10810021	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10810022	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810023	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10961221	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10961222	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12351336	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1327511	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35054099	0.91[ASN][1000 genomes]
rs7018993	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7031137	0.90[ASN][1000 genomes]
rs7855381	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13750800-13758800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13751000-13758800	Weak transcription	HSMM	muscle

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