Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1011529	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10733265	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10733266	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10733268	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10733269	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738343	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10738344	0.83[ASN][1000 genomes]
rs10756494	0.82[ASN][1000 genomes]
rs10756497	0.83[EUR][1000 genomes]
rs10810013	0.89[ASN][1000 genomes]
rs10810014	0.92[ASN][1000 genomes]
rs10810017	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10810021	0.80[EUR][1000 genomes]
rs10810022	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10810023	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10961221	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10961222	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12351336	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1327511	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35054099	0.91[ASN][1000 genomes]
rs7018993	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7031137	0.91[ASN][1000 genomes]
rs7855381	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13749600-13750800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:13749600-13750800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:13749600-13751000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:13749600-13751000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:13749600-13751000	Enhancers	Osteobl	bone
6	chr9:13749600-13751200	Enhancers	HMEC	breast
7	chr9:13749600-13751200	Enhancers	NH-A	brain
8	chr9:13749600-13751200	Enhancers	NHEK	skin
9	chr9:13749600-13751400	Enhancers	HUVEC	blood vessel
10	chr9:13749800-13751000	Enhancers	HSMM	muscle
11	chr9:13749800-13751000	Enhancers	NHLF	lung
12	chr9:13749800-13751200	Enhancers	HSMMtube	muscle
13	chr9:13750000-13750800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:13750000-13750800	Enhancers	Fetal Brain Female	brain
15	chr9:13750200-13750600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:13750200-13750600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr9:13750200-13750800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:13750200-13750800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:13750200-13750800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:13750200-13751400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:13750400-13750800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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