Variant report

Variant	rs4741460
Chromosome Location	chr9:15100861-15100862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15098843..15101225-chr9:15422041..15424261,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10116796	0.91[AFR][1000 genomes]
rs10120028	0.91[AFR][1000 genomes]
rs10121250	0.91[AFR][1000 genomes]
rs10122944	0.91[AFR][1000 genomes]
rs10453187	1.00[AMR][1000 genomes]
rs10756646	0.85[AFR][1000 genomes]
rs10756647	0.81[AFR][1000 genomes]
rs10810346	0.91[AFR][1000 genomes]
rs1936713	0.91[AFR][1000 genomes]
rs1936714	0.91[AFR][1000 genomes]
rs1936720	0.91[AFR][1000 genomes]
rs1936721	0.91[AFR][1000 genomes]
rs2105414	0.91[AFR][1000 genomes]
rs2105415	0.91[AFR][1000 genomes]
rs2382516	0.91[AFR][1000 genomes]
rs2761117	0.82[AFR][1000 genomes]
rs4237137	0.91[AFR][1000 genomes]
rs4269631	0.82[AFR][1000 genomes]
rs4275306	0.91[AFR][1000 genomes]
rs4305996	0.82[AFR][1000 genomes]
rs4307425	0.91[AFR][1000 genomes]
rs4373617	0.91[AFR][1000 genomes]
rs4401969	0.91[AFR][1000 genomes]
rs4451417	0.91[AFR][1000 genomes]
rs4517211	0.91[AFR][1000 genomes]
rs4520265	0.85[AFR][1000 genomes]
rs4526461	0.91[AFR][1000 genomes]
rs4559332	0.88[AFR][1000 genomes]
rs4579616	0.91[AFR][1000 genomes]
rs4740601	0.91[AFR][1000 genomes]
rs4740602	0.83[AFR][1000 genomes]
rs4741456	0.85[AFR][1000 genomes]
rs4741457	0.91[AFR][1000 genomes]
rs4741458	0.85[AFR][1000 genomes]
rs4741459	0.91[AFR][1000 genomes]
rs4741461	0.91[AFR][1000 genomes]
rs6474891	0.91[AFR][1000 genomes]
rs6474892	0.91[AFR][1000 genomes]
rs6474894	0.85[AFR][1000 genomes]
rs7019779	0.91[AFR][1000 genomes]
rs7019934	0.82[AFR][1000 genomes]
rs7038339	1.00[AMR][1000 genomes]
rs7466658	0.91[AFR][1000 genomes]
rs7466688	0.91[AFR][1000 genomes]
rs7469171	0.91[AFR][1000 genomes]
rs7469190	0.91[AFR][1000 genomes]
rs9298721	0.91[AFR][1000 genomes]
rs9298722	0.91[AFR][1000 genomes]
rs9298723	0.91[AFR][1000 genomes]
rs9298724	0.91[AFR][1000 genomes]
rs9987459	0.91[AFR][1000 genomes]
rs9987584	0.91[AFR][1000 genomes]
rs9987587	0.91[AFR][1000 genomes]
rs9987728	0.80[AFR][1000 genomes]
rs9987732	0.91[AFR][1000 genomes]
rs9987917	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15099200-15101200	Enhancers	HepG2	liver
2	chr9:15100000-15101000	Enhancers	Fetal Kidney	kidney
3	chr9:15100000-15101200	Flanking Active TSS	Fetal Lung	lung
4	chr9:15100000-15101600	Enhancers	Fetal Heart	heart
5	chr9:15100000-15101600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:15100000-15101800	Enhancers	Fetal Stomach	stomach
7	chr9:15100400-15101400	Weak transcription	Placenta	Placenta
8	chr9:15100800-15101400	Enhancers	Fetal Brain Female	brain
9	chr9:15100800-15101600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:15100800-15102000	Active TSS	Fetal Brain Male	brain

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