Variant report

Variant	rs9987728
Chromosome Location	chr9:15100117-15100118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15098843..15101225-chr9:15422041..15424261,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10116796	0.88[AFR][1000 genomes]
rs10120028	0.88[AFR][1000 genomes]
rs10121250	0.88[AFR][1000 genomes]
rs10122944	0.88[AFR][1000 genomes]
rs10756646	0.83[AFR][1000 genomes]
rs10756651	0.89[ASN][1000 genomes]
rs10810346	0.88[AFR][1000 genomes]
rs16932608	0.81[EUR][1000 genomes]
rs1936713	0.88[AFR][1000 genomes]
rs1936714	0.88[AFR][1000 genomes]
rs1936720	0.88[AFR][1000 genomes]
rs1936721	0.88[AFR][1000 genomes]
rs2105414	0.88[AFR][1000 genomes]
rs2105415	0.88[AFR][1000 genomes]
rs2382516	0.88[AFR][1000 genomes]
rs2761117	0.80[AFR][1000 genomes]
rs34748934	0.81[EUR][1000 genomes]
rs34830110	0.81[EUR][1000 genomes]
rs35442945	0.81[EUR][1000 genomes]
rs4237137	0.88[AFR][1000 genomes]
rs4269631	0.80[AFR][1000 genomes]
rs4275306	0.88[AFR][1000 genomes]
rs4305996	0.80[AFR][1000 genomes]
rs4307425	0.88[AFR][1000 genomes]
rs4373617	0.88[AFR][1000 genomes]
rs4401969	0.88[AFR][1000 genomes]
rs4451417	0.88[AFR][1000 genomes]
rs4517211	0.88[AFR][1000 genomes]
rs4520265	0.83[AFR][1000 genomes]
rs4526461	0.88[AFR][1000 genomes]
rs4559332	0.86[AFR][1000 genomes]
rs4579616	0.88[AFR][1000 genomes]
rs4740601	0.88[AFR][1000 genomes]
rs4740602	0.80[AFR][1000 genomes]
rs4741456	0.83[AFR][1000 genomes]
rs4741457	0.88[AFR][1000 genomes]
rs4741458	0.83[AFR][1000 genomes]
rs4741459	0.88[AFR][1000 genomes]
rs4741460	0.80[AFR][1000 genomes]
rs4741461	0.88[AFR][1000 genomes]
rs60234999	0.81[EUR][1000 genomes]
rs61300262	0.84[ASN][1000 genomes]
rs61462769	0.89[ASN][1000 genomes]
rs62535095	0.81[EUR][1000 genomes]
rs62535154	0.89[ASN][1000 genomes]
rs62535156	0.89[ASN][1000 genomes]
rs62535159	0.89[ASN][1000 genomes]
rs6474891	0.88[AFR][1000 genomes]
rs6474892	0.88[AFR][1000 genomes]
rs6474894	0.83[AFR][1000 genomes]
rs7019779	0.88[AFR][1000 genomes]
rs71513208	0.81[EUR][1000 genomes]
rs71513209	0.81[EUR][1000 genomes]
rs7466658	0.88[AFR][1000 genomes]
rs7466688	0.88[AFR][1000 genomes]
rs7469171	0.88[AFR][1000 genomes]
rs7469190	0.88[AFR][1000 genomes]
rs9298721	0.88[AFR][1000 genomes]
rs9298722	0.88[AFR][1000 genomes]
rs9298723	0.88[AFR][1000 genomes]
rs9298724	0.88[AFR][1000 genomes]
rs9987459	0.88[AFR][1000 genomes]
rs9987584	0.88[AFR][1000 genomes]
rs9987587	0.88[AFR][1000 genomes]
rs9987732	0.88[AFR][1000 genomes]
rs9987917	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15099000-15100600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:15099200-15101200	Enhancers	HepG2	liver
3	chr9:15100000-15100200	Weak transcription	Placenta	Placenta
4	chr9:15100000-15100400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:15100000-15100400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:15100000-15100600	Enhancers	Colon Smooth Muscle	Colon
7	chr9:15100000-15101000	Enhancers	Fetal Kidney	kidney
8	chr9:15100000-15101200	Flanking Active TSS	Fetal Lung	lung
9	chr9:15100000-15101600	Enhancers	Fetal Heart	heart
10	chr9:15100000-15101600	Enhancers	Fetal Muscle Leg	muscle
11	chr9:15100000-15101800	Enhancers	Fetal Stomach	stomach

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