Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:15104494..15105436-chr9:15134860..15135453,3	MCF-7	breast:
2	chr9:15104624..15105430-chr9:15416660..15417504,2	MCF-7	breast:
3	chr9:15104683..15105453-chr9:15134855..15135757,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10756651	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1780160	0.85[EUR][1000 genomes]
rs56886360	0.85[EUR][1000 genomes]
rs60048952	0.85[EUR][1000 genomes]
rs61462769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62535094	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62535154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62535156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62535157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62535159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62537060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62537126	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62537128	0.85[EUR][1000 genomes]
rs62537130	0.85[EUR][1000 genomes]
rs62537131	0.85[EUR][1000 genomes]
rs62537135	0.85[EUR][1000 genomes]
rs62537136	0.85[EUR][1000 genomes]
rs62537137	0.85[EUR][1000 genomes]
rs7036854	0.85[EUR][1000 genomes]
rs73642991	0.85[EUR][1000 genomes]
rs9987728	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15101800-15110400	Weak transcription	Fetal Stomach	stomach
2	chr9:15103200-15105000	Enhancers	Fetal Lung	lung
3	chr9:15103400-15104800	Enhancers	Primary T cells from cord blood	blood
4	chr9:15103600-15105200	Enhancers	Fetal Thymus	thymus
5	chr9:15103800-15105200	Enhancers	Thymus	Thymus

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