Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1780160	1.00[EUR][1000 genomes]
rs55726747	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56100125	0.86[EUR][1000 genomes]
rs58206501	0.82[AFR][1000 genomes]
rs60048952	1.00[EUR][1000 genomes]
rs60302774	0.82[AFR][1000 genomes]
rs61300262	0.85[EUR][1000 genomes]
rs61462769	0.85[EUR][1000 genomes]
rs62535094	0.85[EUR][1000 genomes]
rs62535154	0.85[EUR][1000 genomes]
rs62535156	0.85[EUR][1000 genomes]
rs62535157	0.85[EUR][1000 genomes]
rs62535159	0.85[EUR][1000 genomes]
rs62537060	0.85[EUR][1000 genomes]
rs62537128	1.00[EUR][1000 genomes]
rs62537130	1.00[EUR][1000 genomes]
rs62537131	1.00[EUR][1000 genomes]
rs62537132	0.93[EUR][1000 genomes]
rs62537134	0.93[EUR][1000 genomes]
rs62537135	1.00[EUR][1000 genomes]
rs62537136	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62537137	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036854	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73642991	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15125200-15136600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:15127400-15135200	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:15129600-15133800	Enhancers	Fetal Thymus	thymus
4	chr9:15132400-15135200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:15132600-15135000	Weak transcription	Fetal Lung	lung
6	chr9:15132600-15135400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:15132800-15135000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:15133000-15134600	Weak transcription	Fetal Heart	heart
9	chr9:15133000-15135000	Weak transcription	Thymus	Thymus
10	chr9:15133400-15134000	Enhancers	HepG2	liver
11	chr9:15133600-15135200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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