Variant report

Variant	rs1780160
Chromosome Location	chr9:15127943-15127944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1746329	0.83[AFR][1000 genomes]
rs55726747	0.92[EUR][1000 genomes]
rs56100125	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56886360	1.00[EUR][1000 genomes]
rs60048952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61300262	0.85[EUR][1000 genomes]
rs61462769	0.85[EUR][1000 genomes]
rs62535094	0.85[EUR][1000 genomes]
rs62535154	0.85[EUR][1000 genomes]
rs62535156	0.85[EUR][1000 genomes]
rs62535157	0.85[EUR][1000 genomes]
rs62535159	0.85[EUR][1000 genomes]
rs62537060	0.85[EUR][1000 genomes]
rs62537128	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537132	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537134	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537135	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036854	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73642991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15125200-15136600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:15125800-15129200	Enhancers	Fetal Thymus	thymus
3	chr9:15126800-15129200	Enhancers	Fetal Heart	heart
4	chr9:15127000-15128200	Bivalent Enhancer	Thymus	Thymus
5	chr9:15127400-15128400	Weak transcription	Psoas Muscle	Psoas
6	chr9:15127400-15135200	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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