Variant report

Variant	rs62537132
Chromosome Location	chr9:15129280-15129281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1780160	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726747	0.85[EUR][1000 genomes]
rs56100125	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56886360	0.93[EUR][1000 genomes]
rs60048952	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537128	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537130	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537131	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537134	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537135	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537136	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537137	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036854	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73642991	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15125200-15136600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:15127400-15135200	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:15128200-15133000	Enhancers	Thymus	Thymus
4	chr9:15128600-15132000	Weak transcription	Psoas Muscle	Psoas
5	chr9:15129200-15129600	Weak transcription	Fetal Thymus	thymus
6	chr9:15129200-15130400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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