Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15117708..15120327-chr9:15124924..15126439,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1780160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726747	0.92[EUR][1000 genomes]
rs56100125	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56886360	1.00[EUR][1000 genomes]
rs60048952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61300262	0.85[EUR][1000 genomes]
rs61462769	0.85[EUR][1000 genomes]
rs62535094	0.85[EUR][1000 genomes]
rs62535154	0.85[EUR][1000 genomes]
rs62535156	0.85[EUR][1000 genomes]
rs62535157	0.85[EUR][1000 genomes]
rs62535159	0.85[EUR][1000 genomes]
rs62537060	0.85[EUR][1000 genomes]
rs62537128	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537132	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537134	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537135	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62537137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036854	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73642991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15118000-15126800	Weak transcription	Fetal Heart	heart
2	chr9:15118400-15127000	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:15124800-15125800	Flanking Active TSS	Fetal Thymus	thymus
4	chr9:15125200-15136600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:15125400-15127000	Enhancers	Thymus	Thymus

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