Variant report

Variant	rs4742751
Chromosome Location	chr9:98532320-98532321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:98532173-98532540	HepG2	liver:	n/a	n/a
2	JUN	chr9:98532277-98532527	HepG2	liver:	n/a	chr9:98532351-98532364
3	JUND	chr9:98532301-98532501	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98531848..98533634-chr9:98635544..98637181,2	MCF-7	breast:
2	chr9:98530888..98533284-chr9:98539147..98541445,2	K562	blood:

Variant related genes	Relation type
ENSG00000268926	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10120944	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28454319	0.89[ASN][1000 genomes]
rs3739752	0.81[CEU][hapmap]
rs4743320	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7031550	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7042092	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7860168	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98527600-98532600	Weak transcription	Ovary	ovary
2	chr9:98527600-98533000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:98527600-98533800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:98527800-98532400	Weak transcription	Fetal Stomach	stomach
5	chr9:98528000-98533200	Weak transcription	Fetal Intestine Large	intestine
6	chr9:98528000-98533600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:98528200-98532400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:98529200-98532400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:98529600-98532400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:98529600-98532400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr9:98529800-98533800	Weak transcription	Brain Anterior Caudate	brain
12	chr9:98529800-98534000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:98530200-98533000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:98531400-98533000	Weak transcription	Colonic Mucosa	Colon
15	chr9:98531600-98534000	Enhancers	Placenta	Placenta
16	chr9:98531800-98532600	Enhancers	Fetal Lung	lung
17	chr9:98531800-98532800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr9:98531800-98535600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:98532000-98532600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
20	chr9:98532000-98532600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:98532000-98532800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:98532000-98532800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr9:98532000-98533400	Enhancers	HepG2	liver
24	chr9:98532200-98533000	Weak transcription	Lung	lung
25	chr9:98532200-98534600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:98532200-98535400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:98532200-98535800	Enhancers	Fetal Intestine Small	intestine

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