Variant report

Variant	rs4742753
Chromosome Location	chr9:98532840-98532841
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr9:98532794-98533425	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98531848..98533634-chr9:98635544..98637181,2	MCF-7	breast:
2	chr9:98530888..98533284-chr9:98539147..98541445,2	K562	blood:

Variant related genes	Relation type
ENSG00000268926	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4743316	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4743317	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478964	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478965	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7035466	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7045260	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045635	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98527600-98533000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:98527600-98533800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:98528000-98533200	Weak transcription	Fetal Intestine Large	intestine
4	chr9:98528000-98533600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:98529800-98533800	Weak transcription	Brain Anterior Caudate	brain
6	chr9:98529800-98534000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:98530200-98533000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:98531400-98533000	Weak transcription	Colonic Mucosa	Colon
9	chr9:98531600-98534000	Enhancers	Placenta	Placenta
10	chr9:98531800-98535600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:98532000-98533400	Enhancers	HepG2	liver
12	chr9:98532200-98533000	Weak transcription	Lung	lung
13	chr9:98532200-98534600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:98532200-98535400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:98532200-98535800	Enhancers	Fetal Intestine Small	intestine
16	chr9:98532400-98533000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:98532400-98533000	Enhancers	Fetal Stomach	stomach
18	chr9:98532400-98533200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr9:98532400-98533200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:98532400-98533200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr9:98532400-98533200	Enhancers	Gastric	stomach
22	chr9:98532400-98533800	Enhancers	Fetal Kidney	kidney
23	chr9:98532600-98533200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:98532600-98533400	Enhancers	Fetal Muscle Leg	muscle
25	chr9:98532600-98533600	Enhancers	Stomach Smooth Muscle	stomach
26	chr9:98532600-98533800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr9:98532600-98534000	Enhancers	Ovary	ovary
28	chr9:98532600-98534400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
29	chr9:98532600-98535200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:98532600-98535400	Enhancers	Pancreas	Pancrea
31	chr9:98532800-98533000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr9:98532800-98533000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
33	chr9:98532800-98533000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
34	chr9:98532800-98533000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
35	chr9:98532800-98533200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr9:98532800-98533400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
37	chr9:98532800-98533800	Enhancers	Fetal Lung	lung
38	chr9:98532800-98534200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:98532800-98534800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr9:98532800-98534800	Enhancers	Fetal Heart	heart
41	chr9:98532800-98535400	Enhancers	H1 Cell Line	embryonic stem cell

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