Variant report

Variant	rs4742770
Chromosome Location	chr9:98587300-98587301
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98585623..98589276-chr9:98636803..98639212,4	MCF-7	breast:
2	chr9:98569719..98571881-chr9:98585000..98587559,2	MCF-7	breast:
3	chr9:98582540..98585042-chr9:98586577..98588192,2	MCF-7	breast:
4	chr9:98585752..98588064-chr9:98594275..98596472,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175611	Chromatin interaction
ENSG00000182150	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55758100	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4742770	C9orf130	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98570400-98589200	Weak transcription	Left Ventricle	heart
2	chr9:98570400-98589200	Weak transcription	Right Ventricle	heart
3	chr9:98570400-98593200	Weak transcription	Gastric	stomach
4	chr9:98570400-98593800	Weak transcription	Right Atrium	heart
5	chr9:98570800-98601400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:98576000-98596000	Weak transcription	Aorta	Aorta
7	chr9:98581800-98593800	Weak transcription	Fetal Intestine Small	intestine
8	chr9:98585200-98593600	Weak transcription	Spleen	Spleen
9	chr9:98585800-98588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:98585800-98588800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:98585800-98589200	Weak transcription	Lung	lung
12	chr9:98585800-98592200	Weak transcription	Ovary	ovary
13	chr9:98585800-98593200	Weak transcription	Fetal Stomach	stomach
14	chr9:98585800-98593200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:98586000-98587600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:98586000-98588200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:98586000-98588600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:98586000-98593200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:98586200-98588200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:98586200-98588200	Weak transcription	HUVEC	blood vessel
21	chr9:98586600-98588000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links