Variant report

Variant	rs4743164
Chromosome Location	chr9:100864249-100864250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100862346..100865171-chr9:100880500..100883017,2	K562	blood:
2	chr9:100860198..100865318-chr9:100878989..100883996,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106785	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10985048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985065	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12552242	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55972150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478563	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7022455	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7855251	0.90[ASN][1000 genomes]
rs7865340	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv614935	chr9:100861387-100876284	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100847400-100869400	Weak transcription	A549	lung
2	chr9:100847600-100867000	Weak transcription	Hela-S3	cervix
3	chr9:100850400-100868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:100850400-100880400	Weak transcription	HSMM	muscle
5	chr9:100850600-100864400	Weak transcription	Brain Germinal Matrix	brain
6	chr9:100850600-100875400	Weak transcription	NHLF	lung
7	chr9:100850600-100880600	Weak transcription	Fetal Lung	lung
8	chr9:100854600-100870800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:100854800-100870800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:100855000-100864400	Weak transcription	Brain Angular Gyrus	brain
11	chr9:100855000-100866800	Weak transcription	Placenta	Placenta
12	chr9:100855000-100868200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:100855200-100864400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:100855200-100864400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:100855600-100864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:100857800-100869400	Weak transcription	Left Ventricle	heart
17	chr9:100858200-100868000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:100858200-100869000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:100858400-100872000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:100858600-100866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:100858600-100880400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:100858600-100880400	Weak transcription	Brain Anterior Caudate	brain
23	chr9:100858800-100864400	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:100858800-100867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr9:100859000-100867000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:100859200-100880600	Weak transcription	Gastric	stomach
27	chr9:100859400-100864600	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr9:100859600-100864400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr9:100860000-100869000	Strong transcription	Fetal Intestine Small	intestine
30	chr9:100860200-100880800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:100860600-100864600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr9:100860600-100868000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:100861400-100868000	Enhancers	Primary hematopoietic stem cells	blood
34	chr9:100861400-100871800	Enhancers	Primary B cells from peripheral blood	blood
35	chr9:100861400-100880600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:100862200-100872200	Enhancers	Primary B cells from cord blood	blood
37	chr9:100862200-100872400	Weak transcription	Esophagus	oesophagus
38	chr9:100862400-100864400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:100862400-100864400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:100862400-100864400	Enhancers	Primary T cells fromperipheralblood	blood
41	chr9:100862400-100864400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:100862400-100864600	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr9:100862400-100864600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr9:100862400-100864600	Enhancers	Fetal Thymus	thymus
45	chr9:100862400-100866200	Weak transcription	HepG2	liver
46	chr9:100862400-100866600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:100862400-100866800	Weak transcription	Fetal Stomach	stomach
48	chr9:100862400-100867000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:100862400-100867000	Weak transcription	Spleen	Spleen
50	chr9:100862400-100867200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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