Variant report

Variant	rs4743903
Chromosome Location	chr9:95967147-95967148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59475172..59477375-chr9:95965489..95967271,2	MCF-7	breast:
2	chr9:95965438..95972862-chr9:95973191..95979158,8	MCF-7	breast:
3	chr9:95894379..95898101-chr9:95963413..95967627,3	MCF-7	breast:
4	chr9:95963232..95968490-chr9:95968804..95973983,9	MCF-7	breast:
5	chr9:95945262..95950257-chr9:95966611..95970015,4	K562	blood:
6	chr9:95963970..95967338-chr9:96031466..96034520,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165238	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000131669	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10761197	1.00[AFR][1000 genomes]
rs10821081	0.81[EUR][1000 genomes]
rs10992667	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1105079	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539669	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2398818	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2398821	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4743899	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4743902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744182	1.00[AFR][1000 genomes]
rs6479461	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6479464	0.81[EUR][1000 genomes]
rs7039424	1.00[AFR][1000 genomes]
rs7858813	1.00[AFR][1000 genomes]
rs7866375	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95950800-95967400	Enhancers	Fetal Heart	heart
2	chr9:95955800-95985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:95957000-95973400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:95958200-95972800	Enhancers	Left Ventricle	heart
5	chr9:95958200-95975600	Enhancers	Pancreas	Pancrea
6	chr9:95959000-95967200	Weak transcription	Small Intestine	intestine
7	chr9:95959200-95970200	Weak transcription	Lung	lung
8	chr9:95960400-95971400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:95960600-95975800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:95962200-95970600	Enhancers	Fetal Brain Male	brain
11	chr9:95962200-95973400	Enhancers	Right Ventricle	heart
12	chr9:95962400-95969600	Enhancers	Brain Anterior Caudate	brain
13	chr9:95962600-95970200	Enhancers	Brain Angular Gyrus	brain
14	chr9:95962800-95967400	Enhancers	Colon Smooth Muscle	Colon
15	chr9:95962800-95972600	Enhancers	Fetal Muscle Leg	muscle
16	chr9:95962800-95975600	Enhancers	Fetal Intestine Large	intestine
17	chr9:95963200-95970800	Enhancers	Fetal Thymus	thymus
18	chr9:95963200-95971200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr9:95963400-95967600	Enhancers	Fetal Intestine Small	intestine
20	chr9:95963400-95968400	Flanking Active TSS	HepG2	liver
21	chr9:95963400-95972800	Enhancers	Psoas Muscle	Psoas
22	chr9:95963600-95967600	Enhancers	Fetal Brain Female	brain
23	chr9:95963800-95972400	Enhancers	Right Atrium	heart
24	chr9:95964000-95971000	Enhancers	Brain Hippocampus Middle	brain
25	chr9:95964200-95968000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:95964200-95970200	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr9:95964400-95967600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:95964600-95969400	Weak transcription	Fetal Kidney	kidney
29	chr9:95964600-95970200	Enhancers	Duodenum Mucosa	Duodenum
30	chr9:95964800-95967200	Weak transcription	Fetal Lung	lung
31	chr9:95964800-95967200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr9:95964800-95968400	Weak transcription	Esophagus	oesophagus
33	chr9:95965000-95969600	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr9:95965600-95969000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr9:95965800-95967400	Enhancers	Rectal Smooth Muscle	rectum
36	chr9:95965800-95971200	Enhancers	Brain Cingulate Gyrus	brain
37	chr9:95965800-95973200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:95966000-95967400	Weak transcription	Stomach Mucosa	stomach
39	chr9:95966200-95967200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:95966200-95967400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:95966200-95967600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:95966200-95968200	Enhancers	Fetal Stomach	stomach
43	chr9:95966200-95973000	Enhancers	Colonic Mucosa	Colon
44	chr9:95966400-95967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:95966400-95968200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:95966400-95970200	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr9:95966800-95967200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:95966800-95967200	Weak transcription	Brain Substantia Nigra	brain
49	chr9:95966800-95967600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:95966800-95967800	Enhancers	Brain Germinal Matrix	brain

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