Variant report

Variant	rs6479461
Chromosome Location	chr9:95935782-95935783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10761197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539669	0.80[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap]
rs2154076	1.00[ASW][hapmap]
rs2398818	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2398821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3934851	1.00[ASW][hapmap]
rs4743899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743902	0.80[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4743903	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4744182	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4744184	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6479464	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7039424	1.00[AFR][1000 genomes]
rs7041800	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs7045686	0.88[ASN][1000 genomes]
rs7858813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7866375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
2	chr9:95931400-95935800	Weak transcription	Right Ventricle	heart
3	chr9:95934800-95936200	Enhancers	Fetal Lung	lung
4	chr9:95935200-95936000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:95935200-95936600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:95935400-95936000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:95935400-95936000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:95935400-95936200	Enhancers	Spleen	Spleen
9	chr9:95935400-95936400	Enhancers	Fetal Intestine Small	intestine
10	chr9:95935400-95936600	Enhancers	Fetal Intestine Large	intestine
11	chr9:95935600-95936000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:95935600-95936000	Enhancers	Lung	lung
13	chr9:95935600-95936200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:95935600-95936200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr9:95935600-95936200	Enhancers	Fetal Thymus	thymus
16	chr9:95935600-95936200	Enhancers	Left Ventricle	heart
17	chr9:95935600-95936400	Enhancers	Duodenum Mucosa	Duodenum
18	chr9:95935600-95936400	Enhancers	Gastric	stomach
19	chr9:95935600-95936400	Enhancers	Pancreas	Pancrea
20	chr9:95935600-95936600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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