Variant report

Variant	rs4744098
Chromosome Location	chr9:94544282-94544283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94543593..94546607-chr9:94711686..94713670,3	K562	blood:
2	chr9:94542440..94546170-chr9:94710664..94713670,3	K562	blood:
3	chr9:94541932..94544615-chr9:94547110..94550430,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10992100	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34854279	0.89[AFR][1000 genomes]
rs4467997	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744097	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60099576	0.81[AFR][1000 genomes]
rs7021529	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7026175	0.89[AFR][1000 genomes]
rs7039620	0.95[AFR][1000 genomes]
rs7855079	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94533400-94549600	Weak transcription	Colonic Mucosa	Colon
2	chr9:94533600-94545400	Enhancers	Stomach Smooth Muscle	stomach
3	chr9:94534400-94546800	Weak transcription	Fetal Kidney	kidney
4	chr9:94536200-94544600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:94537800-94545000	Weak transcription	Fetal Intestine Small	intestine
6	chr9:94537800-94546000	Weak transcription	Gastric	stomach
7	chr9:94538000-94548800	Weak transcription	Esophagus	oesophagus
8	chr9:94540600-94546000	Weak transcription	K562	blood
9	chr9:94540800-94545000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:94543200-94544400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:94543200-94544400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:94543200-94544600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:94543200-94545400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:94543200-94546600	Enhancers	Fetal Lung	lung
15	chr9:94543400-94544400	Enhancers	Rectal Smooth Muscle	rectum
16	chr9:94543400-94544600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:94543400-94544800	Enhancers	Ovary	ovary
18	chr9:94543400-94549200	Enhancers	Colon Smooth Muscle	Colon
19	chr9:94543600-94544600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:94543600-94544600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:94543600-94544600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:94543600-94544600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr9:94543600-94551200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:94543800-94545000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr9:94543800-94545000	Enhancers	Fetal Stomach	stomach
26	chr9:94543800-94545200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:94543800-94549000	Weak transcription	Fetal Heart	heart
28	chr9:94544200-94544400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:94544200-94545400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:94544200-94545800	Enhancers	Primary T cells from cord blood	blood

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