Variant report

Variant	rs7021529
Chromosome Location	chr9:94539902-94539903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:94539741-94540092	K562	blood:	n/a	chr9:94539892-94539903
2	STAT3	chr9:94539810-94540046	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr9:94539744-94540078	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr9:94539894-94539959	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr9:94539846-94540066	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr9:94539763-94540065	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr9:94539374-94540028	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr9:94539302-94540685	IMR90	lung:	n/a	chr9:94540509-94540520 chr9:94540508-94540521 chr9:94539892-94539903
9	STAT3	chr9:94539759-94540065	MCF10A-Er-Src	breast:	n/a	chr9:94539764-94539771
10	MYC	chr9:94539461-94540161	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr9:94539740-94540007	K562	blood:	n/a	chr9:94539892-94539903
12	E2F4	chr9:94539843-94540127	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr9:94539764-94540081	MCF10A-Er-Src	breast:	n/a	n/a
14	STAT3	chr9:94539766-94540040	MCF10A-Er-Src	breast:	n/a	n/a
15	CEBPB	chr9:94539795-94540027	HepG2	liver:	n/a	chr9:94539892-94539903
16	CEBPB	chr9:94539753-94540073	A549	lung:	n/a	chr9:94539892-94539903
17	CEBPB	chr9:94539729-94540082	Hela-S3	cervix:	n/a	chr9:94539892-94539903
18	FOS	chr9:94539760-94540056	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:94538454..94541185-chr9:94545334..94547122,2	K562	blood:
2	chr9:94537581..94539213-chr9:94539659..94541309,2	MCF-7	breast:
3	chr9:94538158..94540180-chr9:94661146..94663275,2	K562	blood:

Variant related genes	Relation type
ROR2	TF binding region
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10992100	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4467997	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744097	0.95[EUR][1000 genomes]
rs4744098	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94533000-94542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:94533000-94543600	Weak transcription	Right Atrium	heart
3	chr9:94533400-94549600	Weak transcription	Colonic Mucosa	Colon
4	chr9:94533600-94545400	Enhancers	Stomach Smooth Muscle	stomach
5	chr9:94534400-94546800	Weak transcription	Fetal Kidney	kidney
6	chr9:94536000-94543200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:94536000-94543600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:94536200-94544600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:94537000-94543400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:94537800-94541000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:94537800-94543400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:94537800-94545000	Weak transcription	Fetal Intestine Small	intestine
13	chr9:94537800-94546000	Weak transcription	Gastric	stomach
14	chr9:94538000-94540400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:94538000-94540400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:94538000-94540600	Enhancers	NHLF	lung
17	chr9:94538000-94541000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:94538000-94548800	Weak transcription	Esophagus	oesophagus
19	chr9:94538600-94540800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:94538600-94543200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:94538800-94540600	Enhancers	K562	blood
22	chr9:94538800-94540600	Enhancers	NHDF-Ad	bronchial
23	chr9:94538800-94540600	Bivalent Enhancer	Osteobl	bone
24	chr9:94538800-94543400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr9:94538800-94543400	Weak transcription	Ovary	ovary
26	chr9:94539000-94540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:94539000-94540200	Weak transcription	Lung	lung
28	chr9:94539000-94540800	Enhancers	HSMM	muscle
29	chr9:94539000-94543200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr9:94539200-94540400	Enhancers	Adipose Nuclei	Adipose
31	chr9:94539200-94543400	Weak transcription	Fetal Heart	heart
32	chr9:94539400-94540000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:94539400-94540400	Enhancers	NH-A	brain
34	chr9:94539400-94540400	Enhancers	NHEK	skin
35	chr9:94539400-94540800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:94539400-94540800	Enhancers	Fetal Lung	lung
37	chr9:94539400-94543400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr9:94539600-94540000	Enhancers	HMEC	breast
39	chr9:94539600-94540400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:94539600-94540600	Enhancers	Muscle Satellite Cultured Cells	--
41	chr9:94539600-94543600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr9:94539600-94543800	Weak transcription	Fetal Stomach	stomach
43	chr9:94539800-94540200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:94539800-94540600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:94539800-94542600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:94539800-94543400	Weak transcription	Colon Smooth Muscle	Colon

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