Variant report

Variant	rs4744480
Chromosome Location	chr9:92686413-92686414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92206823..92209475-chr9:92684160..92686501,2	MCF-7	breast:
2	chr9:92218872..92221885-chr9:92684149..92688442,4	MCF-7	breast:
3	chr9:92455398..92458346-chr9:92686302..92688067,2	MCF-7	breast:
4	chr9:92217841..92222641-chr9:92679830..92688712,19	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10115379	0.89[ASN][1000 genomes]
rs10119039	0.89[ASN][1000 genomes]
rs10821059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10992652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16905902	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16905907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17443508	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17540718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17540745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17541277	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17541305	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4743950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4743958	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4743964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4744475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4744479	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7029990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3399737	chr9:92682932-92687130	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92681600-92691600	Weak transcription	Right Atrium	heart
2	chr9:92681800-92689000	Weak transcription	Right Ventricle	heart
3	chr9:92682000-92689200	Weak transcription	Lung	lung
4	chr9:92683800-92689200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:92684400-92687400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:92684400-92687400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr9:92685000-92687200	Enhancers	HepG2	liver
8	chr9:92685000-92690800	Enhancers	Liver	Liver
9	chr9:92685000-92691200	Weak transcription	Spleen	Spleen
10	chr9:92685200-92689200	Weak transcription	Gastric	stomach
11	chr9:92685400-92688600	Weak transcription	Fetal Brain Male	brain
12	chr9:92685800-92687000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:92686000-92686600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:92686200-92686600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:92686200-92686600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:92686200-92686600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:92686200-92686600	Enhancers	Fetal Heart	heart
18	chr9:92686200-92686600	Enhancers	Fetal Lung	lung
19	chr9:92686200-92686600	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr9:92686200-92686600	Enhancers	Fetal Thymus	thymus
21	chr9:92686200-92686600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr9:92686200-92686600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr9:92686200-92686600	Enhancers	NH-A	brain
24	chr9:92686200-92686800	Enhancers	Fetal Intestine Small	intestine
25	chr9:92686200-92686800	Enhancers	Ovary	ovary
26	chr9:92686200-92687000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:92686200-92687000	Enhancers	Primary B cells from peripheral blood	blood
28	chr9:92686200-92687000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr9:92686200-92687000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr9:92686200-92687000	Enhancers	Fetal Intestine Large	intestine
31	chr9:92686200-92687000	Enhancers	Placenta	Placenta
32	chr9:92686200-92687400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr9:92686200-92689800	Enhancers	Pancreas	Pancrea
34	chr9:92686400-92686600	Enhancers	Primary hematopoietic stem cells	blood
35	chr9:92686400-92686600	Enhancers	Stomach Mucosa	stomach
36	chr9:92686400-92686600	Enhancers	Stomach Smooth Muscle	stomach
37	chr9:92686400-92686800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr9:92686400-92686800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr9:92686400-92687000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:92686400-92687400	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr9:92686400-92689600	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links