Variant report

Variant	rs7029990
Chromosome Location	chr9:92681245-92681246
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10115379	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10119039	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821059	0.82[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16905902	0.93[ASN][1000 genomes]
rs16905907	0.86[ASN][1000 genomes]
rs17443508	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17540718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17540745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17541277	1.00[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17541305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4743950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4743958	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4743964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4744475	1.00[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4744479	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4744480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92679000-92683000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:92679000-92684000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:92679400-92681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:92679400-92681800	Enhancers	Placenta	Placenta
5	chr9:92679600-92681400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:92679600-92681400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:92679600-92685000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:92680000-92685600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:92680400-92681800	Enhancers	Right Ventricle	heart
10	chr9:92680400-92685000	Weak transcription	Pancreas	Pancrea
11	chr9:92680600-92682800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:92681000-92681800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:92681000-92681800	Enhancers	Fetal Heart	heart
14	chr9:92681200-92681800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:92681200-92681800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:92681200-92681800	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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