The 2.0 version of rSNPBase

Variant report

Variant rs475087
Chromosome Location chr17:38628001-38628002
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38614200-38629200 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr17:38619200-38632000 Weak transcription Right Atrium heart
3 chr17:38620600-38632200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr17:38625400-38628800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
5 chr17:38626400-38628800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr17:38626400-38629800 Enhancers NHEK skin
7 chr17:38626600-38629000 Enhancers Osteobl bone
8 chr17:38626600-38630000 Enhancers HMEC breast
9 chr17:38626600-38631600 Enhancers Fetal Stomach stomach
10 chr17:38627000-38633000 Enhancers Rectal Smooth Muscle rectum
11 chr17:38627200-38628400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr17:38627200-38628600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr17:38627200-38628800 Enhancers NH-A brain
14 chr17:38627200-38628800 Enhancers NHDF-Ad bronchial
15 chr17:38627200-38629000 Flanking Active TSS Stomach Smooth Muscle stomach
16 chr17:38627200-38629000 Enhancers NHLF lung
17 chr17:38627200-38629200 Enhancers HepG2 liver
18 chr17:38627200-38631800 Enhancers Placenta Placenta
19 chr17:38627200-38631800 Enhancers Hela-S3 cervix
20 chr17:38627200-38632000 Enhancers Breast Myoepithelial Primary Cells Breast
21 chr17:38627200-38632400 Enhancers HUES6 Cell Line embryonic stem cell
22 chr17:38627200-38633000 Enhancers Colon Smooth Muscle Colon
23 chr17:38627200-38633400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
24 chr17:38627200-38633400 Enhancers Ovary ovary
25 chr17:38627400-38628200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
26 chr17:38627400-38628600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr17:38627400-38628600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr17:38627400-38628800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr17:38627400-38628800 Enhancers Muscle Satellite Cultured Cells --
30 chr17:38627400-38629000 Enhancers ES-WA7 Cell Line embryonic stem cell
31 chr17:38627400-38629000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
32 chr17:38627400-38630000 Enhancers Placenta Amnion Placenta Amnion
33 chr17:38627400-38633200 Enhancers Duodenum Smooth Muscle Duodenum
34 chr17:38627400-38646200 Weak transcription Gastric stomach
35 chr17:38627600-38628400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr17:38627600-38628400 Enhancers Fetal Intestine Small intestine
37 chr17:38627600-38630800 Weak transcription Spleen Spleen
38 chr17:38627600-38632800 Enhancers Liver Liver
39 chr17:38627800-38628400 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr17:38627800-38628400 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr17:38627800-38628400 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr17:38627800-38629600 Weak transcription Duodenum Mucosa Duodenum
43 chr17:38627800-38629800 Weak transcription Fetal Intestine Large intestine
44 chr17:38627800-38630800 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr17:38627800-38630800 Enhancers A549 lung
46 chr17:38627800-38631000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr17:38627800-38631400 Weak transcription Fetal Lung lung
48 chr17:38628000-38628400 Weak transcription Esophagus oesophagus
49 chr17:38628000-38630400 Weak transcription ES-I3 Cell Line embryonic stem cell
50 chr17:38628000-38630600 Weak transcription K562 blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015