Variant report

Variant	rs7211995
Chromosome Location	chr17:38621581-38621582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38620514..38622716-chr17:38686553..38688120,2	K562	blood:
2	chr17:38619664..38621845-chr17:38716492..38718933,2	MCF-7	breast:
3	chr17:38617849..38619385-chr17:38619757..38622445,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126353	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11078948	0.84[ASN][1000 genomes]
rs11652694	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1666263	0.96[ASN][1000 genomes]
rs17557153	0.91[ASN][1000 genomes]
rs2122614	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs475087	0.96[ASN][1000 genomes]
rs56308624	0.99[ASN][1000 genomes]
rs627857	0.89[ASN][1000 genomes]
rs7224214	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9303288	0.96[ASN][1000 genomes]
rs9893209	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38614000-38623400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:38614200-38629200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:38615400-38624600	Weak transcription	HSMM	muscle
4	chr17:38618000-38621600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr17:38618000-38622600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:38619000-38627200	Weak transcription	Spleen	Spleen
7	chr17:38619200-38627200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr17:38619200-38632000	Weak transcription	Right Atrium	heart
9	chr17:38619600-38627200	Weak transcription	NH-A	brain
10	chr17:38619600-38627400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr17:38619800-38627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr17:38620600-38627200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr17:38620600-38627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr17:38620600-38627200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:38620600-38632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr17:38621000-38624800	Weak transcription	Fetal Kidney	kidney
17	chr17:38621000-38626200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr17:38621200-38621600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr17:38621200-38625800	Weak transcription	A549	lung
20	chr17:38621200-38626600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr17:38621200-38627400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr17:38621200-38627400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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