Variant report

Variant	rs475161
Chromosome Location	chr11:75102223-75102224
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75098909..75103589-chr11:75108306..75112041,8	MCF-7	breast:
2	chr11:75098397..75102826-chr11:75109397..75111957,5	MCF-7	breast:
3	chr11:75101158..75102844-chr11:75112154..75113952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11236417	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11236420	0.99[ASN][1000 genomes]
rs12363921	0.81[ASN][1000 genomes]
rs2851459	0.81[CEU][hapmap]
rs3016302	0.84[ASN][1000 genomes]
rs3016304	0.99[ASN][1000 genomes]
rs473233	0.87[ASN][1000 genomes]
rs473961	0.84[ASN][1000 genomes]
rs475099	0.83[ASN][1000 genomes]
rs477625	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs477783	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs478777	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs489691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs504683	0.82[CEU][hapmap]
rs515343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs521455	0.86[ASN][1000 genomes]
rs532279	0.92[ASN][1000 genomes]
rs536516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs536538	0.99[ASN][1000 genomes]
rs542784	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs542944	0.99[ASN][1000 genomes]
rs546715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs552129	0.87[ASN][1000 genomes]
rs555875	1.00[JPT][hapmap]
rs567647	0.92[ASN][1000 genomes]
rs569796	0.82[CEU][hapmap]
rs575781	0.92[ASN][1000 genomes]
rs576508	0.87[ASN][1000 genomes]
rs580152	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs598062	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598936	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs613248	0.99[ASN][1000 genomes]
rs613690	0.91[ASN][1000 genomes]
rs627133	0.89[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs629991	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs646360	0.81[ASN][1000 genomes]
rs654079	0.81[ASN][1000 genomes]
rs663235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs686020	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75100200-75110200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:75100400-75105200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:75100400-75105400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:75100400-75106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:75100400-75106000	Weak transcription	Spleen	Spleen
6	chr11:75100400-75106200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:75100400-75106800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:75100400-75110400	Weak transcription	HSMMtube	muscle
9	chr11:75100600-75105400	Weak transcription	K562	blood
10	chr11:75100600-75110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:75101200-75105800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:75101800-75103200	Enhancers	Hela-S3	cervix

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