Variant report

Variant	rs555875
Chromosome Location	chr11:75075328-75075329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75059438..75065729-chr11:75070757..75077420,9	MCF-7	breast:
2	chr11:75073760..75076326-chr11:75079019..75081067,2	K562	blood:
3	chr11:75074475..75076955-chr11:75084896..75086435,2	MCF-7	breast:
4	chr11:75067548..75069783-chr11:75074663..75077055,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11236417	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12363921	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2510894	0.88[CEU][hapmap]
rs3016302	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs473233	0.84[ASN][1000 genomes]
rs473961	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs475099	0.88[ASN][1000 genomes]
rs475161	1.00[JPT][hapmap]
rs477625	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs477783	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs477837	0.84[CEU][hapmap]
rs478777	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs489691	1.00[JPT][hapmap]
rs506412	0.85[CEU][hapmap]
rs515343	1.00[JPT][hapmap]
rs518115	0.96[CEU][hapmap]
rs521455	0.83[ASN][1000 genomes]
rs536516	1.00[JPT][hapmap]
rs542784	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs546715	1.00[JPT][hapmap]
rs552129	0.82[ASN][1000 genomes]
rs576508	0.84[ASN][1000 genomes]
rs582477	1.00[CEU][hapmap]
rs598936	1.00[JPT][hapmap]
rs627133	0.90[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs629991	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs630429	0.89[ASN][1000 genomes]
rs646360	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs654079	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs658573	0.84[CEU][hapmap]
rs663235	1.00[JPT][hapmap]
rs672534	1.00[JPT][hapmap]
rs677106	1.00[CEU][hapmap]
rs686020	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv468637	chr11:75069871-75075866	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv555445	chr11:75069871-75075866	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv516556	chr11:75071783-75080920	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75063600-75076800	Weak transcription	Hela-S3	cervix
2	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:75066600-75076000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:75067200-75076400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:75068800-75080800	Weak transcription	Spleen	Spleen
6	chr11:75072200-75075800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:75072200-75076800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:75072200-75077000	Weak transcription	Primary B cells from cord blood	blood
9	chr11:75072400-75076000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr11:75075200-75076000	Weak transcription	Primary hematopoietic stem cells	blood

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