Variant report

Variant	rs4756034
Chromosome Location	chr11:45875955-45875956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45823557..45830738-chr11:45863397..45877001,19	MCF-7	breast:
2	chr11:45873444..45876329-chr4:74608235..74610589,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181830	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11038677	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2002244	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2292912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824872	0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4756037	0.92[ASN][1000 genomes]
rs7105609	0.81[ASN][1000 genomes]
rs7108730	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951225	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45869800-45883600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45870400-45876400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:45870400-45878600	Weak transcription	HUVEC	blood vessel
4	chr11:45870600-45876600	Weak transcription	Fetal Thymus	thymus
5	chr11:45870600-45877000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:45870600-45877200	Enhancers	Left Ventricle	heart
7	chr11:45870600-45877400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:45870600-45877400	Weak transcription	Hela-S3	cervix
9	chr11:45870600-45877600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:45870600-45878800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:45870600-45879800	Weak transcription	Esophagus	oesophagus
12	chr11:45870800-45876800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:45870800-45876800	Weak transcription	Brain Germinal Matrix	brain
14	chr11:45870800-45877000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:45870800-45877200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:45870800-45880800	Weak transcription	HMEC	breast
17	chr11:45871000-45877000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:45871000-45877000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:45871000-45877600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr11:45871000-45878600	Weak transcription	Fetal Kidney	kidney
21	chr11:45871600-45876600	Enhancers	Brain Anterior Caudate	brain
22	chr11:45872200-45877000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:45872200-45877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:45872400-45876000	Enhancers	Brain Hippocampus Middle	brain
25	chr11:45872400-45876800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:45872400-45877000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:45872400-45877000	Weak transcription	Fetal Lung	lung
28	chr11:45872400-45877000	Enhancers	Rectal Smooth Muscle	rectum
29	chr11:45872400-45877000	Weak transcription	Dnd41	blood
30	chr11:45872400-45877000	Weak transcription	K562	blood
31	chr11:45872400-45877000	Weak transcription	NHLF	lung
32	chr11:45872400-45877200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:45872400-45877400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:45872400-45877400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr11:45872400-45877600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:45872400-45877600	Enhancers	Brain Cingulate Gyrus	brain
37	chr11:45872400-45878400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:45872400-45878400	Weak transcription	NHEK	skin
39	chr11:45872600-45877000	Weak transcription	Placenta	Placenta
40	chr11:45872600-45878600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:45872600-45878600	Weak transcription	HSMMtube	muscle
42	chr11:45872600-45878800	Weak transcription	HSMM	muscle
43	chr11:45872600-45880200	Weak transcription	Aorta	Aorta
44	chr11:45872800-45876600	Weak transcription	Fetal Intestine Large	intestine
45	chr11:45872800-45877200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:45872800-45878600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:45872800-45879000	Weak transcription	NH-A	brain
48	chr11:45873000-45877000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:45873000-45877400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:45873200-45877200	Enhancers	Skeletal Muscle Female	skeletal muscle

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