Variant report
| Variant | rs4757308 |
|---|---|
| Chromosome Location | chr11:15372929-15372930 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:15368518..15371257-chr11:15372733..15374518,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10832406 | 0.80[ASN][1000 genomes] |
| rs10832407 | 0.80[ASN][1000 genomes] |
| rs10832410 | 0.81[ASN][1000 genomes] |
| rs10832411 | 0.82[ASN][1000 genomes] |
| rs11023550 | 0.82[ASN][1000 genomes] |
| rs11023551 | 0.82[ASN][1000 genomes] |
| rs12222004 | 0.80[ASN][1000 genomes] |
| rs3925090 | 0.82[ASN][1000 genomes] |
| rs4757311 | 0.82[ASN][1000 genomes] |
| rs57520278 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs57784160 | 0.80[ASN][1000 genomes] |
| rs6486241 | 0.81[ASN][1000 genomes] |
| rs7111011 | 0.82[ASN][1000 genomes] |
| rs7114823 | 0.82[ASN][1000 genomes] |
| rs7122143 | 0.82[ASN][1000 genomes] |
| rs7130361 | 0.82[ASN][1000 genomes] |
| rs7937161 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2830370 | chr11:15142247-15444094 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv832072 | chr11:15226843-15392190 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044103 | chr11:15345545-15390081 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3387855 | chr11:15371576-15376774 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | esv3384007 | chr11:15371976-15375674 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:15364600-15386000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
