Variant report

Variant	rs4758312
Chromosome Location	chr11:8228042-8228043
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMO1-2	chr11:8223002-8230737	NONHSAT017846

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55682599	1.00[EUR][1000 genomes]
rs56260440	1.00[EUR][1000 genomes]
rs74052013	1.00[EUR][1000 genomes]
rs74052484	1.00[EUR][1000 genomes]
rs74052486	1.00[EUR][1000 genomes]
rs7948595	1.00[EUR][1000 genomes]
rs7948620	1.00[EUR][1000 genomes]
rs7951643	1.00[EUR][1000 genomes]
rs7951894	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040979	chr11:8223090-8272605	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8223000-8228800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:8225600-8230600	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:8226200-8228400	Enhancers	Adipose Nuclei	Adipose
4	chr11:8227000-8228800	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr11:8227200-8229000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:8227200-8229200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr11:8227200-8229200	Bivalent Enhancer	Placenta	Placenta
8	chr11:8227200-8229400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:8227200-8229600	Enhancers	Fetal Brain Male	brain
10	chr11:8227400-8228200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:8227400-8228600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:8227400-8228800	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr11:8227400-8229000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:8227600-8228200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
15	chr11:8227600-8228600	Active TSS	Brain Substantia Nigra	brain
16	chr11:8227600-8229000	Bivalent Enhancer	Fetal Intestine Small	intestine
17	chr11:8227600-8229000	Enhancers	Left Ventricle	heart
18	chr11:8227600-8229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:8227600-8229400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr11:8227600-8229800	Enhancers	Fetal Heart	heart
21	chr11:8227800-8228200	Active TSS	Brain Anterior Caudate	brain
22	chr11:8227800-8228200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
23	chr11:8227800-8228400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:8227800-8228600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr11:8227800-8228600	Active TSS	Brain Germinal Matrix	brain
26	chr11:8227800-8228600	Active TSS	Ovary	ovary
27	chr11:8227800-8228800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
28	chr11:8227800-8228800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
29	chr11:8227800-8228800	Active TSS	Fetal Brain Female	brain
30	chr11:8227800-8228800	Enhancers	Pancreas	Pancrea
31	chr11:8227800-8229400	Enhancers	Spleen	Spleen
32	chr11:8228000-8228200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
33	chr11:8228000-8228200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:8228000-8228200	Active TSS	Brain Cingulate Gyrus	brain
35	chr11:8228000-8228200	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr11:8228000-8228200	Flanking Active TSS	Fetal Stomach	stomach
37	chr11:8228000-8228200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
38	chr11:8228000-8228400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:8228000-8228400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
40	chr11:8228000-8228400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
41	chr11:8228000-8228400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
42	chr11:8228000-8228400	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr11:8228000-8228400	Flanking Active TSS	Right Atrium	heart
44	chr11:8228000-8228400	Active TSS	Right Ventricle	heart
45	chr11:8228000-8228400	Active TSS	K562	blood
46	chr11:8228000-8228600	Active TSS	Brain Angular Gyrus	brain
47	chr11:8228000-8228600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:8228000-8228600	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr11:8228000-8228800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr11:8228000-8228800	Flanking Active TSS	Primary B cells from peripheral blood	blood

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