Variant report

Variant	rs74052484
Chromosome Location	chr11:8214429-8214430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8213801..8214811-chr11:8255818..8256741,4	MCF-7	breast:
2	chr11:8214233..8214925-chr11:8331212..8332019,2	MCF-7	breast:
3	chr11:8213784..8214547-chr11:8246894..8247601,2	K562	blood:
4	chr11:8213811..8214943-chr11:8230472..8231459,4	K562	blood:
5	chr11:8213913..8214737-chr11:8588214..8589161,2	K562	blood:
6	chr11:8213871..8214757-chr11:8285265..8285950,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166407	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4758312	1.00[EUR][1000 genomes]
rs55682599	1.00[EUR][1000 genomes]
rs56260440	1.00[EUR][1000 genomes]
rs74052013	1.00[EUR][1000 genomes]
rs74052486	1.00[EUR][1000 genomes]
rs7948595	1.00[EUR][1000 genomes]
rs7948620	1.00[EUR][1000 genomes]
rs7951643	1.00[EUR][1000 genomes]
rs7951894	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1826805	chr11:8201022-8215751	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1829890	chr11:8201022-8215751	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553444	chr11:8201125-8215751	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553445	chr11:8201305-8215853	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8213600-8214600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:8213600-8214600	Enhancers	Esophagus	oesophagus
3	chr11:8213800-8215000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:8213800-8215200	Enhancers	Brain Hippocampus Middle	brain
5	chr11:8214000-8214600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:8214000-8214600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:8214000-8214600	Enhancers	Brain Substantia Nigra	brain
8	chr11:8214000-8214800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:8214000-8215400	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:8214200-8214600	Bivalent Enhancer	Adipose Nuclei	Adipose
11	chr11:8214200-8214800	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr11:8214200-8215200	Enhancers	Brain Germinal Matrix	brain
13	chr11:8214200-8215200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr11:8214400-8214600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:8214400-8214600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr11:8214400-8214600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:8214400-8214600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr11:8214400-8214600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
19	chr11:8214400-8214600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr11:8214400-8214600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:8214400-8214600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:8214400-8214600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr11:8214400-8214600	Bivalent Enhancer	Fetal Stomach	stomach
24	chr11:8214400-8214600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr11:8214400-8214600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
26	chr11:8214400-8214600	Enhancers	Hela-S3	cervix
27	chr11:8214400-8214800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:8214400-8214800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:8214400-8214800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:8214400-8214800	Enhancers	Brain Angular Gyrus	brain
31	chr11:8214400-8214800	Enhancers	Brain Anterior Caudate	brain
32	chr11:8214400-8214800	Bivalent Enhancer	Placenta	Placenta
33	chr11:8214400-8214800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
34	chr11:8214400-8215000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:8214400-8215000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr11:8214400-8215000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:8214400-8215000	Enhancers	Brain Cingulate Gyrus	brain

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