Variant report
| Variant | rs4760822 |
|---|---|
| Chromosome Location | chr12:72479611-72479612 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1114596 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11179071 | 0.91[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap] |
| rs11614604 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1385319 | 0.83[EUR][1000 genomes] |
| rs1484830 | 0.83[EUR][1000 genomes] |
| rs1484832 | 0.83[EUR][1000 genomes] |
| rs1484833 | 0.83[EUR][1000 genomes] |
| rs1484834 | 0.82[EUR][1000 genomes] |
| rs1487283 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1522733 | 0.82[EUR][1000 genomes] |
| rs17110747 | 0.81[JPT][hapmap] |
| rs1851500 | 0.83[EUR][1000 genomes] |
| rs3858589 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs588697 | 0.85[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs593949 | 0.82[EUR][1000 genomes] |
| rs61924286 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs634621 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6582085 | 0.82[EUR][1000 genomes] |
| rs6582086 | 0.82[EUR][1000 genomes] |
| rs7977245 | 0.82[EUR][1000 genomes] |
| rs985207 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518498 | chr12:72307616-72508779 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054578 | chr12:72307616-72509341 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv899256 | chr12:72409548-72499323 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4760822 | LYZ | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:72478600-72480400 | Enhancers | Ovary | ovary |
