Variant report

Variant	rs11614604
Chromosome Location	chr12:72503687-72503688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10879344	1.00[YRI][hapmap]
rs1114596	0.86[EUR][1000 genomes]
rs11179003	1.00[YRI][hapmap]
rs11179032	1.00[YRI][hapmap]
rs11179038	1.00[YRI][hapmap]
rs11179056	1.00[YRI][hapmap]
rs11179064	1.00[YRI][hapmap]
rs11179071	0.90[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs12230254	1.00[YRI][hapmap]
rs12231731	1.00[YRI][hapmap]
rs1487283	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17110747	0.90[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs3858589	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4760822	0.80[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61924286	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs634621	0.82[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518498	chr12:72307616-72508779	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1054578	chr12:72307616-72509341	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2422452	chr12:72485933-73175581	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:72502400-72503800	Enhancers	H9 Cell Line	embryonic stem cell
2	chr12:72502400-72504400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:72503000-72504000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:72503600-72504000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:72503600-72504600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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