Variant report

Variant	rs4763015
Chromosome Location	chr12:64709603-64709604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10459259	1.00[AFR][1000 genomes]
rs10735922	0.96[AFR][1000 genomes]
rs10878133	0.81[AFR][1000 genomes]
rs10878145	1.00[AFR][1000 genomes]
rs1162970	0.87[AFR][1000 genomes]
rs1436361	1.00[AFR][1000 genomes]
rs1469862	1.00[AFR][1000 genomes]
rs1708200	0.96[AFR][1000 genomes]
rs1865796	0.96[AFR][1000 genomes]
rs1898221	1.00[AFR][1000 genomes]
rs2082951	0.92[AFR][1000 genomes]
rs2335390	0.87[AFR][1000 genomes]
rs2453509	0.96[AFR][1000 genomes]
rs2575290	0.96[AFR][1000 genomes]
rs4237925	1.00[AFR][1000 genomes]
rs4522269	0.96[AFR][1000 genomes]
rs4572232	1.00[AFR][1000 genomes]
rs4763153	0.92[AFR][1000 genomes]
rs4763155	0.84[AFR][1000 genomes]
rs4763156	1.00[AFR][1000 genomes]
rs6421211	1.00[AFR][1000 genomes]
rs6581542	1.00[AFR][1000 genomes]
rs7488560	1.00[AFR][1000 genomes]
rs790014	0.96[AFR][1000 genomes]
rs790017	0.96[AFR][1000 genomes]
rs7955105	1.00[AFR][1000 genomes]
rs7976524	1.00[AFR][1000 genomes]
rs813156	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64698600-64710000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:64698600-64714000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:64706200-64713800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:64706600-64712000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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