Variant report

Variant	rs4763153
Chromosome Location	chr12:64701857-64701858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64700521..64702909-chr12:64717073..64718593,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10459258	1.00[AMR][1000 genomes]
rs10459259	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10735920	1.00[AMR][1000 genomes]
rs10735921	1.00[AMR][1000 genomes]
rs10735922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10878133	1.00[AMR][1000 genomes]
rs10878145	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1162970	1.00[AMR][1000 genomes]
rs11830260	1.00[AMR][1000 genomes]
rs11835078	1.00[AMR][1000 genomes]
rs1436361	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1469862	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1657051	1.00[AMR][1000 genomes]
rs1708200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865796	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1898221	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2082951	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2335390	1.00[AMR][1000 genomes]
rs2453509	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2575290	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2575294	1.00[AMR][1000 genomes]
rs35744300	1.00[AMR][1000 genomes]
rs4237925	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4522269	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4572232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4763015	0.92[AFR][1000 genomes]
rs4763156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6421211	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6581542	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs696658	1.00[AMR][1000 genomes]
rs696659	1.00[AMR][1000 genomes]
rs699629	1.00[AMR][1000 genomes]
rs699630	1.00[AMR][1000 genomes]
rs699631	1.00[AMR][1000 genomes]
rs699632	1.00[AMR][1000 genomes]
rs699635	1.00[AMR][1000 genomes]
rs699636	1.00[AMR][1000 genomes]
rs699637	1.00[AMR][1000 genomes]
rs699638	1.00[AMR][1000 genomes]
rs73315583	1.00[AMR][1000 genomes]
rs73315593	1.00[AMR][1000 genomes]
rs73315599	1.00[AMR][1000 genomes]
rs7488560	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs789723	1.00[AMR][1000 genomes]
rs789726	1.00[AMR][1000 genomes]
rs789727	1.00[AMR][1000 genomes]
rs789728	1.00[AMR][1000 genomes]
rs789730	1.00[AMR][1000 genomes]
rs789738	1.00[AMR][1000 genomes]
rs789742	1.00[AMR][1000 genomes]
rs789747	1.00[AMR][1000 genomes]
rs790013	1.00[AMR][1000 genomes]
rs790014	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs790017	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7955105	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7976524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs809322	1.00[AMR][1000 genomes]
rs813156	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64687800-64705000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:64696200-64705400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:64698600-64710000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:64698600-64714000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:64701800-64702000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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