Variant report

Variant	rs4763166
Chromosome Location	chr12:62243920-62243921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10784259	0.82[CEU][hapmap]
rs10784265	0.85[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs10877723	0.80[CEU][hapmap]
rs10877724	0.82[CEU][hapmap]
rs10877727	0.82[CEU][hapmap]
rs10877728	0.86[CEU][hapmap]
rs10877729	0.82[ASN][1000 genomes]
rs10877730	0.81[ASN][1000 genomes]
rs10877734	0.82[CEU][hapmap]
rs10877736	0.82[CEU][hapmap]
rs10877738	0.82[CEU][hapmap]
rs10877740	0.82[CEU][hapmap]
rs10877744	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10877747	0.81[ASW][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs11174141	0.82[CEU][hapmap]
rs11174148	0.82[CEU][hapmap]
rs11174152	0.82[CEU][hapmap]
rs11174154	0.85[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11174176	0.85[CEU][hapmap]
rs11174191	0.85[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs11174202	0.87[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174203	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11608376	0.82[CEU][hapmap]
rs11609657	0.82[CEU][hapmap]
rs11613304	0.82[CEU][hapmap]
rs12304279	0.82[CEU][hapmap]
rs12309934	0.87[ASW][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12369048	0.86[CEU][hapmap]
rs12423291	0.82[CEU][hapmap]
rs12424350	0.82[CEU][hapmap]
rs12578673	0.82[CEU][hapmap]
rs12581923	0.82[CEU][hapmap]
rs12809729	0.82[CEU][hapmap]
rs12813599	0.82[CEU][hapmap]
rs12814204	0.82[CEU][hapmap]
rs12823193	0.86[CEU][hapmap]
rs12827424	0.82[CEU][hapmap]
rs12828092	0.82[CEU][hapmap]
rs12830041	0.82[CEU][hapmap]
rs17577005	0.82[CEU][hapmap]
rs1869891	0.84[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs2061207	0.82[CEU][hapmap]
rs2067911	0.82[CEU][hapmap]
rs2198773	0.81[CEU][hapmap]
rs2198774	0.82[CEU][hapmap]
rs2219259	0.82[CEU][hapmap]
rs2219260	0.90[CEU][hapmap]
rs2359982	0.82[CEU][hapmap]
rs4482081	0.82[CEU][hapmap]
rs4511327	0.82[CEU][hapmap]
rs6581424	0.82[CEU][hapmap]
rs6581425	0.85[CHB][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.80[ASN][1000 genomes]
rs6581427	0.85[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6581428	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6581429	0.90[CHD][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7132727	0.82[CEU][hapmap]
rs7137618	0.90[CEU][hapmap]
rs717271	0.82[CEU][hapmap]
rs724986	0.82[CEU][hapmap]
rs7294711	0.82[CEU][hapmap]
rs7306069	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7306758	0.82[CEU][hapmap]
rs7397771	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7484594	0.82[CEU][hapmap]
rs7484716	0.85[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]
rs7484749	0.82[CEU][hapmap]
rs7484947	0.82[CEU][hapmap]
rs7486563	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7487085	0.82[CEU][hapmap]
rs7488101	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7489024	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7957748	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7968946	0.82[CEU][hapmap]
rs7979124	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4763166	CLCA2	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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