Variant report

Variant	rs12828092
Chromosome Location	chr12:62262411-62262412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10784259	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs10877723	0.92[CEU][hapmap]
rs10877724	0.92[CEU][hapmap]
rs10877727	0.92[CEU][hapmap]
rs10877728	0.96[CEU][hapmap]
rs10877734	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs10877736	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs10877738	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs10877740	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs11174141	0.92[CEU][hapmap]
rs11174148	0.92[CEU][hapmap]
rs11174149	0.92[CEU][hapmap]
rs11174152	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs11174176	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs11174202	0.82[CEU][hapmap]
rs11174203	0.82[CEU][hapmap]
rs11608376	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs11609198	0.86[CEU][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11609657	0.92[CEU][hapmap];0.86[ASN][1000 genomes]
rs11613304	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs11614225	0.81[EUR][1000 genomes]
rs12304279	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs12369048	0.92[CEU][hapmap]
rs12422512	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12423291	0.92[CEU][hapmap]
rs12423850	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12424350	0.92[CEU][hapmap];0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs12578673	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12579930	0.81[EUR][1000 genomes]
rs12581090	0.81[EUR][1000 genomes]
rs12581923	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs12809540	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12809729	0.92[CEU][hapmap];0.80[AFR][1000 genomes]
rs12811649	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs12811994	0.81[EUR][1000 genomes]
rs12813599	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs12814184	0.82[EUR][1000 genomes]
rs12814204	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs12815221	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12818281	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs12821872	0.87[ASN][1000 genomes]
rs12823193	0.92[CEU][hapmap];0.84[CHB][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12826571	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs12827424	0.92[CEU][hapmap]
rs12830041	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs12831273	0.84[EUR][1000 genomes]
rs17125407	0.87[ASN][1000 genomes]
rs17577005	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs2061207	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs2061208	0.85[CHB][hapmap]
rs2067911	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs2198773	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs2198774	0.92[CEU][hapmap];0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs2198775	0.80[CEU][hapmap];0.86[ASN][1000 genomes]
rs2198780	0.83[ASN][1000 genomes]
rs2198781	0.83[ASN][1000 genomes]
rs2219259	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs2219260	0.91[CEU][hapmap];0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs2359981	0.83[EUR][1000 genomes]
rs2359982	0.92[CEU][hapmap];0.82[AFR][1000 genomes]
rs2884858	0.83[EUR][1000 genomes]
rs2884859	0.83[EUR][1000 genomes]
rs2884860	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs34053266	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34604177	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34884798	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35378675	0.81[EUR][1000 genomes]
rs35395140	0.81[EUR][1000 genomes]
rs35772232	0.87[ASN][1000 genomes]
rs35785062	0.82[ASN][1000 genomes]
rs4482081	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs4511327	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4763166	0.82[CEU][hapmap]
rs61942566	0.82[ASN][1000 genomes]
rs61942614	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61942620	0.87[EUR][1000 genomes]
rs61942621	0.83[EUR][1000 genomes]
rs6581424	0.92[CEU][hapmap]
rs67880722	0.84[EUR][1000 genomes]
rs67925612	0.84[EUR][1000 genomes]
rs7132727	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7137618	0.92[CEU][hapmap]
rs717271	0.92[CEU][hapmap]
rs724986	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs7294711	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs7306758	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs73125574	0.83[ASN][1000 genomes]
rs7315668	0.90[CEU][hapmap]
rs7484594	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs7484749	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs7484947	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs7487085	0.92[CEU][hapmap]
rs7968946	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7977604	0.84[CEU][hapmap]
rs7979124	0.88[CEU][hapmap];0.89[CHB][hapmap]
rs7979223	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62252200-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62257800-62263400	Weak transcription	Adipose Nuclei	Adipose
3	chr12:62257800-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:62261600-62266000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr12:62262200-62264600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:62262400-62263400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:62262400-62263600	Weak transcription	Primary monocytes fromperipheralblood	blood

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