Variant report

Variant	rs34884798
Chromosome Location	chr12:62259700-62259701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11608376	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11609198	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11609657	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11614225	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12367913	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12370254	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12371231	0.82[EUR][1000 genomes]
rs12422512	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12423850	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12424350	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12578673	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12579930	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12581090	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12809540	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12809729	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12811994	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12813599	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12814184	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12814204	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12815221	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12818281	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12821872	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12823193	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12826350	0.88[AFR][1000 genomes]
rs12826571	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12828092	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12831273	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17125407	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2198774	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2198775	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2198780	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2198781	0.89[EUR][1000 genomes]
rs2219260	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2359981	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2359982	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2884858	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884859	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884860	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34053266	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34604177	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34810430	0.91[AMR][1000 genomes]
rs35378675	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35395140	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35406568	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35772232	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35785062	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4511327	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61942563	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61942566	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61942614	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61942620	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61942621	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67880722	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67925612	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7306758	0.82[EUR][1000 genomes]
rs73125574	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7315668	0.82[EUR][1000 genomes]
rs7484594	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7484947	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62252200-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62257800-62263400	Weak transcription	Adipose Nuclei	Adipose
3	chr12:62257800-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:62258600-62260000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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