Variant report

Variant	rs61942566
Chromosome Location	chr12:62171043-62171044
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10784255	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10784256	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10784257	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10784258	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10784259	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10877723	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10877724	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10877725	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10877726	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10877727	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10877728	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10877731	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10877734	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877735	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877736	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877737	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877738	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877739	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877740	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11174141	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11174148	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11174149	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11174150	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11174152	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11174157	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174158	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174160	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11174161	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11608376	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11609198	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11609657	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11609916	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11613304	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11614225	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11615924	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12184468	0.90[ASN][1000 genomes]
rs12304279	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12367913	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12369048	0.85[EUR][1000 genomes]
rs12370254	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12371231	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12422512	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12423850	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12424350	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12578673	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12579930	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12581090	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12581195	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12809540	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12809729	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12811994	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12813599	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12814184	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12814204	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12815221	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12818281	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12821872	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12823193	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12826350	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12826571	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12828092	0.82[ASN][1000 genomes]
rs12829322	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12831273	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17125407	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2198774	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2198775	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2198780	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2198781	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2219260	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2359981	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2359982	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28672870	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28830203	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2884858	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2884859	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2884860	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34053266	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34586287	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34604177	0.84[EUR][1000 genomes]
rs34884798	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35378675	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35395140	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35406568	0.93[EUR][1000 genomes]
rs35772232	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35785062	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807037	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4511327	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61942563	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61942614	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61942620	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61942621	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6581424	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67880722	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67925612	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7132134	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7132727	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7137618	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7306758	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73125574	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7315668	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7484594	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7484623	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7484749	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7484947	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7485481	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7487085	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7487661	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7488105	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7488993	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7961924	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7964226	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7977604	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7979124	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7979223	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv826402	chr12:62116803-62178453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv826403	chr12:62130037-62190482	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1040154	chr12:62145382-62176964	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv976633	chr12:62161502-62171322	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62157600-62172000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:62163400-62173200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:62163400-62175200	Weak transcription	Aorta	Aorta
4	chr12:62169800-62171800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:62170000-62177400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:62170200-62171800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:62170800-62171200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr12:62170800-62171200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:62170800-62171400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr12:62170800-62172400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr12:62170800-62174400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr12:62170800-62175400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr12:62170800-62176200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr12:62171000-62175000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr12:62171000-62175400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links