Variant report

Variant	rs10877725
Chromosome Location	chr12:62112835-62112836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10784255	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10784256	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10784257	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10784258	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10784259	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10877723	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877724	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877726	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10877727	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877728	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877731	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10877734	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10877735	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10877736	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10877737	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10877738	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10877739	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10877740	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174141	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174148	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174149	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174150	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11174152	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174157	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11174158	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11174160	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174161	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11608376	0.82[EUR][1000 genomes]
rs11609198	0.81[EUR][1000 genomes]
rs11609657	0.81[EUR][1000 genomes]
rs11609916	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613304	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11614225	0.81[EUR][1000 genomes]
rs11615924	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12184468	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12304279	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12367913	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12369048	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12370254	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12371231	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12422512	0.81[EUR][1000 genomes]
rs12423850	0.81[EUR][1000 genomes]
rs12424350	0.81[EUR][1000 genomes]
rs12578673	0.81[EUR][1000 genomes]
rs12579930	0.81[EUR][1000 genomes]
rs12581090	0.81[EUR][1000 genomes]
rs12581195	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12809540	0.81[EUR][1000 genomes]
rs12809729	0.81[EUR][1000 genomes]
rs12811994	0.81[EUR][1000 genomes]
rs12814204	0.82[EUR][1000 genomes]
rs12815221	0.81[EUR][1000 genomes]
rs12821872	0.81[EUR][1000 genomes]
rs12823193	0.81[EUR][1000 genomes]
rs12826350	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12829322	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17125407	0.82[EUR][1000 genomes]
rs2198774	0.82[EUR][1000 genomes]
rs2198775	0.81[EUR][1000 genomes]
rs2198780	0.81[EUR][1000 genomes]
rs2198781	0.81[EUR][1000 genomes]
rs2219260	0.81[EUR][1000 genomes]
rs28672870	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28830203	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34053266	0.81[EUR][1000 genomes]
rs34586287	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35378675	0.80[EUR][1000 genomes]
rs35395140	0.80[EUR][1000 genomes]
rs35772232	0.82[EUR][1000 genomes]
rs35785062	0.81[ASN][1000 genomes]
rs35807037	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4511327	0.81[EUR][1000 genomes]
rs61942563	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61942566	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61942614	0.81[EUR][1000 genomes]
rs6581424	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7132134	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7132727	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7137618	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7306758	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73125574	0.81[EUR][1000 genomes]
rs7315668	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7484594	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7484623	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7484749	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7484947	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7485481	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7487085	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7487661	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7488105	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7488993	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7961924	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7964226	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7977604	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7979124	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7979223	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2829973	chr12:62078770-62115165	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv520898	chr12:62078770-62115165	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
5	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62104200-62114200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62104200-62116800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:62108000-62114400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:62108800-62114000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:62109000-62113200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:62109000-62114200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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