Variant report

Variant	rs7487661
Chromosome Location	chr12:62153564-62153565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10784255	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784256	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784257	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784258	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784259	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877723	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10877724	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10877725	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10877726	0.87[EUR][1000 genomes]
rs10877727	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877728	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877731	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877734	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877735	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877736	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877737	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877738	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877739	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174141	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11174148	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174149	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174150	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174152	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174154	0.82[AFR][1000 genomes]
rs11174157	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11174158	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11174160	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174161	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11608376	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11609198	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11609657	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11609916	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11613304	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11614225	0.84[EUR][1000 genomes]
rs11615924	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12184468	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12304279	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12367913	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12369048	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12370254	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12371231	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12422512	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12423850	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12424350	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12578673	0.84[EUR][1000 genomes]
rs12579930	0.84[EUR][1000 genomes]
rs12581090	0.84[EUR][1000 genomes]
rs12581195	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12809540	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12809729	0.85[EUR][1000 genomes]
rs12811994	0.84[EUR][1000 genomes]
rs12813599	0.83[EUR][1000 genomes]
rs12814204	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12815221	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12818281	0.81[EUR][1000 genomes]
rs12821872	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12823193	0.84[EUR][1000 genomes]
rs12826350	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12826571	0.81[EUR][1000 genomes]
rs12829322	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12831273	0.81[EUR][1000 genomes]
rs17125407	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2198774	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2198775	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2198780	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2198781	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2219260	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2359981	0.81[EUR][1000 genomes]
rs2359982	0.81[EUR][1000 genomes]
rs28672870	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28830203	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2884858	0.81[EUR][1000 genomes]
rs2884859	0.81[EUR][1000 genomes]
rs2884860	0.81[EUR][1000 genomes]
rs34053266	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34586287	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35378675	0.83[EUR][1000 genomes]
rs35395140	0.83[EUR][1000 genomes]
rs35406568	0.82[EUR][1000 genomes]
rs35772232	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35785062	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35807037	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4511327	0.84[EUR][1000 genomes]
rs61942563	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61942566	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61942614	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61942621	0.81[EUR][1000 genomes]
rs6581424	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6581427	0.82[AFR][1000 genomes]
rs67880722	0.81[EUR][1000 genomes]
rs67925612	0.81[EUR][1000 genomes]
rs7132134	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7132727	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7137618	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71450557	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7306758	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73125574	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7315668	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7484594	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7484623	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7484749	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7484947	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7485481	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7487085	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7488105	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7488993	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7961924	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7964226	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7977604	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7979124	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7979216	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7979223	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv826402	chr12:62116803-62178453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv826403	chr12:62130037-62190482	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1040154	chr12:62145382-62176964	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62152800-62154400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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