Variant report

Variant	rs12581090
Chromosome Location	chr12:62254329-62254330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10784255	0.81[EUR][1000 genomes]
rs10784256	0.82[EUR][1000 genomes]
rs10784257	0.82[EUR][1000 genomes]
rs10784258	0.81[EUR][1000 genomes]
rs10784259	0.83[EUR][1000 genomes]
rs10877723	0.81[EUR][1000 genomes]
rs10877724	0.81[EUR][1000 genomes]
rs10877725	0.81[EUR][1000 genomes]
rs10877727	0.82[EUR][1000 genomes]
rs10877728	0.81[EUR][1000 genomes]
rs10877731	0.82[EUR][1000 genomes]
rs10877734	0.86[EUR][1000 genomes]
rs10877735	0.84[EUR][1000 genomes]
rs10877736	0.84[EUR][1000 genomes]
rs10877737	0.85[EUR][1000 genomes]
rs10877738	0.85[EUR][1000 genomes]
rs10877739	0.85[EUR][1000 genomes]
rs10877740	0.85[EUR][1000 genomes]
rs11174141	0.81[EUR][1000 genomes]
rs11174148	0.81[EUR][1000 genomes]
rs11174149	0.81[EUR][1000 genomes]
rs11174150	0.81[EUR][1000 genomes]
rs11174152	0.83[EUR][1000 genomes]
rs11174157	0.86[EUR][1000 genomes]
rs11174158	0.86[EUR][1000 genomes]
rs11174160	0.85[EUR][1000 genomes]
rs11174161	0.83[EUR][1000 genomes]
rs11608376	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11609198	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11609657	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11609916	0.81[EUR][1000 genomes]
rs11613304	0.83[EUR][1000 genomes]
rs11614225	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11615924	0.82[EUR][1000 genomes]
rs12304279	0.83[EUR][1000 genomes]
rs12367913	0.91[EUR][1000 genomes]
rs12369048	0.81[EUR][1000 genomes]
rs12370254	0.90[EUR][1000 genomes]
rs12371231	0.91[EUR][1000 genomes]
rs12422512	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12423850	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12424350	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12578673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12581195	0.81[EUR][1000 genomes]
rs12809540	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12809729	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12811994	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12813599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12814184	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12814204	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12815221	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12818281	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821872	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12823193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12826350	0.87[EUR][1000 genomes]
rs12826571	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12828092	0.81[EUR][1000 genomes]
rs12829322	0.83[EUR][1000 genomes]
rs12831273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17125407	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2198774	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2198775	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2198780	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2198781	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2219260	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2359981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2359982	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28672870	0.82[EUR][1000 genomes]
rs28830203	0.80[EUR][1000 genomes]
rs2884858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2884859	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2884860	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34053266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34586287	0.86[EUR][1000 genomes]
rs34604177	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34810430	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34884798	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35378675	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35395140	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35406568	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35772232	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35785062	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35807037	0.83[EUR][1000 genomes]
rs4511327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61942563	0.91[EUR][1000 genomes]
rs61942566	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61942614	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61942620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61942621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6581424	0.83[EUR][1000 genomes]
rs67880722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67925612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7132134	0.82[EUR][1000 genomes]
rs7132727	0.83[EUR][1000 genomes]
rs7137618	0.82[EUR][1000 genomes]
rs7306758	0.91[EUR][1000 genomes]
rs73125574	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7315668	0.90[EUR][1000 genomes]
rs7484594	0.91[EUR][1000 genomes]
rs7484623	0.83[EUR][1000 genomes]
rs7484749	0.84[EUR][1000 genomes]
rs7484947	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7485481	0.83[EUR][1000 genomes]
rs7487085	0.81[EUR][1000 genomes]
rs7487661	0.84[EUR][1000 genomes]
rs7488105	0.82[EUR][1000 genomes]
rs7488993	0.81[EUR][1000 genomes]
rs7961924	0.84[EUR][1000 genomes]
rs7977604	0.85[EUR][1000 genomes]
rs7979124	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62252200-62257400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62252200-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62253800-62255000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:62254200-62254600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links