Variant report

Variant	rs4766805
Chromosome Location	chr12:117262969-117262970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117255957..117259131-chr12:117261216..117264613,4	MCF-7	breast:
2	chr12:117255625..117260515-chr12:117260953..117265280,7	K562	blood:
3	chr12:117262300..117265228-chr12:117296099..117298850,2	K562	blood:
4	chr12:117261097..117263218-chr12:117263784..117265640,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11068196	0.81[ASN][1000 genomes]
rs11068202	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16947003	0.81[ASN][1000 genomes]
rs4766806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55900757	0.82[EUR][1000 genomes]
rs61442995	0.81[ASN][1000 genomes]
rs7302199	0.81[ASN][1000 genomes]
rs7310759	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117257400-117287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:117257600-117272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:117257800-117272800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:117257800-117273400	Weak transcription	Primary T cells from cord blood	blood
5	chr12:117257800-117273600	Weak transcription	Fetal Brain Female	brain
6	chr12:117257800-117276800	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:117258000-117263000	Weak transcription	K562	blood
8	chr12:117258000-117289600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:117258200-117263800	Weak transcription	Brain Anterior Caudate	brain
10	chr12:117258200-117271400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr12:117258200-117273000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:117259000-117264200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr12:117259000-117274800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr12:117259400-117273400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:117259400-117294400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:117259800-117271600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:117260000-117273600	Weak transcription	Thymus	Thymus
18	chr12:117261600-117263600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:117261800-117263400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr12:117262200-117263000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:117262200-117263200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:117262400-117263000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr12:117262400-117263000	ZNF genes & repeats	Brain Angular Gyrus	brain
24	chr12:117262400-117263400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:117262400-117263800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr12:117262600-117263000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:117262600-117263000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
28	chr12:117262600-117263200	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr12:117262600-117263200	ZNF genes & repeats	A549	lung
30	chr12:117262600-117263400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr12:117262800-117263000	ZNF genes & repeats	Dnd41	blood
32	chr12:117262800-117263400	ZNF genes & repeats	Brain Germinal Matrix	brain
33	chr12:117262800-117263400	ZNF genes & repeats	Fetal Thymus	thymus

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