Variant report

Variant	rs7310759
Chromosome Location	chr12:117270847-117270848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117256689..117258680-chr12:117270250..117272345,2	MCF-7	breast:
2	chr12:117269158..117271530-chr12:117276900..117279546,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11068194	0.80[CHB][hapmap]
rs11068202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16946996	0.80[CHB][hapmap]
rs16947003	0.90[CHB][hapmap]
rs17582582	0.80[CHB][hapmap]
rs4766805	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4766806	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55900757	0.82[EUR][1000 genomes]
rs7305537	1.00[CEU][hapmap]
rs7316426	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117257400-117287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:117257600-117272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:117257800-117272800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:117257800-117273400	Weak transcription	Primary T cells from cord blood	blood
5	chr12:117257800-117273600	Weak transcription	Fetal Brain Female	brain
6	chr12:117257800-117276800	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:117258000-117289600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr12:117258200-117271400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:117258200-117273000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:117259000-117274800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr12:117259400-117273400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr12:117259400-117294400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:117259800-117271600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:117260000-117273600	Weak transcription	Thymus	Thymus
15	chr12:117263000-117271600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:117263000-117272200	Weak transcription	Dnd41	blood
17	chr12:117263000-117273000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr12:117263000-117273000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr12:117263000-117296000	Weak transcription	Brain Angular Gyrus	brain
20	chr12:117263200-117273400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:117263200-117276000	Weak transcription	Primary B cells from cord blood	blood
22	chr12:117263400-117272200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr12:117263400-117273000	Weak transcription	Fetal Thymus	thymus
24	chr12:117263400-117273400	Weak transcription	Brain Germinal Matrix	brain
25	chr12:117263400-117273800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr12:117263600-117284000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr12:117263800-117289600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:117264200-117271200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:117264600-117271000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:117266000-117276800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr12:117268000-117274600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr12:117268600-117275200	Weak transcription	GM12878-XiMat	blood
33	chr12:117269600-117291600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr12:117270200-117275600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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