Variant report

Variant	rs4768052
Chromosome Location	chr12:44308910-44308911
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44308839..44309349-chr12:44331764..44332482,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1057486	0.85[ASN][1000 genomes]
rs10736017	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10748378	0.92[ASN][1000 genomes]
rs10785462	0.92[ASN][1000 genomes]
rs10785463	0.92[ASN][1000 genomes]
rs10785466	0.92[ASN][1000 genomes]
rs10785468	0.90[ASN][1000 genomes]
rs10785469	0.98[ASN][1000 genomes]
rs10880573	0.81[ASN][1000 genomes]
rs10880578	0.84[ASN][1000 genomes]
rs10880585	0.92[ASN][1000 genomes]
rs11182293	0.87[ASN][1000 genomes]
rs11182324	0.92[ASN][1000 genomes]
rs11182325	0.92[ASN][1000 genomes]
rs1358705	0.87[ASN][1000 genomes]
rs1406787	0.87[ASN][1000 genomes]
rs1609548	0.92[ASN][1000 genomes]
rs1609549	0.87[ASN][1000 genomes]
rs1610291	0.92[ASN][1000 genomes]
rs1614042	0.87[ASN][1000 genomes]
rs1621279	0.87[ASN][1000 genomes]
rs1622590	0.87[ASN][1000 genomes]
rs1675756	0.87[ASN][1000 genomes]
rs1675758	0.87[ASN][1000 genomes]
rs1675764	0.87[ASN][1000 genomes]
rs1675765	0.87[ASN][1000 genomes]
rs1675767	0.87[ASN][1000 genomes]
rs1675769	0.87[ASN][1000 genomes]
rs1675781	0.90[ASN][1000 genomes]
rs1675785	0.90[ASN][1000 genomes]
rs1675787	0.87[ASN][1000 genomes]
rs1675789	0.87[ASN][1000 genomes]
rs1675790	0.87[ASN][1000 genomes]
rs1731423	0.87[ASN][1000 genomes]
rs1731427	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1731429	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1731430	0.87[ASN][1000 genomes]
rs1731431	0.87[ASN][1000 genomes]
rs1731432	0.87[ASN][1000 genomes]
rs1731434	0.87[ASN][1000 genomes]
rs1731447	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1731452	0.87[ASN][1000 genomes]
rs1731454	0.87[ASN][1000 genomes]
rs1731456	0.87[ASN][1000 genomes]
rs1731457	0.87[ASN][1000 genomes]
rs1731458	0.87[ASN][1000 genomes]
rs1731459	0.87[ASN][1000 genomes]
rs2219629	0.87[ASN][1000 genomes]
rs2407783	0.92[ASN][1000 genomes]
rs2447113	0.87[ASN][1000 genomes]
rs2614394	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2699992	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2951435	0.84[ASN][1000 genomes]
rs4238089	0.92[ASN][1000 genomes]
rs4238090	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4238091	0.92[ASN][1000 genomes]
rs4354753	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4363674	0.92[ASN][1000 genomes]
rs4469953	0.92[ASN][1000 genomes]
rs4537822	0.92[ASN][1000 genomes]
rs4572198	0.92[ASN][1000 genomes]
rs4572199	0.92[ASN][1000 genomes]
rs4609659	0.92[ASN][1000 genomes]
rs4768053	1.00[ASN][1000 genomes]
rs4768534	0.80[AFR][1000 genomes]
rs4768538	0.92[ASN][1000 genomes]
rs4768543	1.00[ASN][1000 genomes]
rs5019975	0.92[ASN][1000 genomes]
rs7295151	0.92[ASN][1000 genomes]
rs7305609	0.87[ASN][1000 genomes]
rs73096934	0.87[ASN][1000 genomes]
rs7955615	0.92[ASN][1000 genomes]
rs7965240	0.94[ASN][1000 genomes]
rs7965330	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526719	chr12:44298417-44315762	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44307000-44315600	Weak transcription	NHDF-Ad	bronchial
2	chr12:44307400-44324000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:44308200-44309800	Enhancers	Left Ventricle	heart
4	chr12:44308400-44318400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:44308600-44314800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:44308800-44309400	Enhancers	Pancreatic Islets	Pancreatic Islet

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